Rv0005 - c.1692A>G


Drug resistance types
8 Sensitive 12 RR-TB 54 HR-TB 23 MDR-TB 4 Pre-XDR-TB 2 XDR-TB 95 Other
lineage Counts
lineage Count
lineage4.1.2.1 8
lineage2.2.1 4
lineage4.1.3 2
lineage4.9 42
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 1
lineage4.9;lineage7 1
lineage4.8.1 1
lineage4.2;lineage4.9 1
lineage2.1 3
M.canetti;lineage2.2.2;lineage6.2 2
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
M.canetti;lineage4.9 3
La3;lineage2.1;lineage4.9;lineage6.3 3
La1.7;lineage4.9 2
lineage4.9;lineage6.3 6
12
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
La1.2.BCG 1
lineage2.1;lineage6.3 2
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage6.3.1 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La2;lineage2.2 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
lineage3 2
lineage4.8 3
La3;lineage4.9 4
lineage2.1;lineage4.9 9
lineage4.6.3;lineage4.9 2
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
La2;lineage4.9 2
lineage4.6.1.1 1
lineage2.1;lineage4.9;lineage6.3 7
La1.7;M.canetti;lineage4.9 2
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage3.1.2.2 1
lineage4 6
lineage2.1;lineage4.1.4;lineage4.9 1
lineage5.2 2
lineage4.3.2;lineage4.9 1
lineage2.2 2
La2;lineage4.9;lineage9 1
lineage4.6.2.2 5
La3 1
lineage4.2;lineage4.6.3;lineage4.9.1 2
lineage4.2;lineage4.6.3;lineage4.9 1
La3;lineage4.8 1
lineage6.1.3 2
lineage4.6.3;lineage4.9;lineage6.3 1
lineage2.2.1.1 2
lineage4.3.4.2 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
La1.7.X-unk4;lineage4.9 1
lineage2.2.1.2 1
La3;lineage4.3.4 1
lineage2.1;lineage4.3.2;lineage4.9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
M.canetti;lineage4.2;lineage4.9 1
lineage4.1.1.1 2
lineage4.1;lineage4.8 1
lineage4.3.3 1
M.canetti;lineage2.1;lineage4.9 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage1.1.1 1
La3;lineage2 1
lineage1.2.2.2 1
La3;lineage2.1;lineage4.9 2
M.canetti;lineage2.1;lineage6.3 1
lineage4.9;lineage9 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.2 2
La3;lineage2.1;lineage6.3 1
La3;M.canetti;lineage2.2.1 1
La1.6;La3;lineage4.9 1
La1.6;La3;lineage4.6.4;lineage4.9 1
lineage3.1.2.1;lineage3.1.2.2 1
spoligotype Counts
spoligotype Count
None 198
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR3804155 Other lineage4.1.2.1 None
ERR4819781 Other lineage2.2.1 None
ERR9786611 HR-TB lineage4.1.3 None
SRR14782405 HR-TB lineage4.9 None
ERR2693257 HR-TB La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 None
ERR4831117 HR-TB lineage4.9;lineage7 None
SRR12708389 MDR-TB lineage4.8.1 None
ERR4828872 RR-TB lineage4.2;lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
ERR6359082 Other lineage4.9 None
SRR6045233 Other M.canetti;lineage4.9 None
SRR7131023 Other lineage4.1.2.1 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR161037 HR-TB lineage4.9 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR9786642 Other lineage4.1.2.1 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR234659 HR-TB None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
ERR3797029 Other lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR212034 HR-TB La1.7;lineage4.9 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR6046385 Sensitive lineage4.9 None
ERR9787139 Other lineage6.3.1 None
SRR6046046 Other lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR4188247 HR-TB lineage4.9 None
ERR4798504 RR-TB lineage3 None
ERR9786569 Other lineage4.8 None
SRR1167384 Other La3;lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
SRR26159047 RR-TB lineage4.6.3;lineage4.9 None
ERR3283024 HR-TB La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
SRR6046225 Other lineage4.9;lineage6.3 None
ERR4799025 Other lineage4.8 None
SRR6046644 MDR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR6358755 Other lineage4.6.1.1 None
ERR9786627 Other lineage4.1.2.1 None
ERR3283019 Other lineage2.1;lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR4769521 RR-TB lineage4.9 None
SRR6046593 Other lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
SRR6046397 RR-TB M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR6359066 HR-TB lineage4.9 None
SRR6045399 Other M.canetti;lineage4.9 None
ERR4798648 MDR-TB lineage3.1.2.2 None
SRR21678367 Sensitive lineage4 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
ERR4872094 MDR-TB lineage5.2 None
ERR736865 MDR-TB lineage4.3.2;lineage4.9 None
ERR4799513 HR-TB lineage2.2 None
ERR181744 HR-TB La3;lineage4.9 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR1165699 Other lineage4.9 None
ERR3801503 Other lineage4.6.2.2 None
SRR1172728 RR-TB La3 None
ERR4814352 Other lineage2.2.1 None
ERR3283042 HR-TB lineage4.9 None
ERR3290633 Other lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR4822579 Sensitive lineage4 tm
ERR3797047 MDR-TB lineage4.9 None
ERR5311097 Other lineage4.2;lineage4.6.3;lineage4.9 None
ERR12015083 Other La3;lineage4.8 None
SRR1165628 Other La3;lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR9787153 Other lineage6.1.3 None
ERR9786711 Other lineage4.6.2.2 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR9787165 Other lineage6.1.3 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
SRR1183106 RR-TB lineage2.2.1.1 None
ERR1034634 HR-TB lineage4.9 None
SRR6046485 Other lineage4.9 None
ERR9786645 Other lineage4.6.2.2 None
ERR9786682 Other lineage4.1.2.1 None
SRR7496509 Other None
ERR9786671 Other None
ERR11252558 Other lineage4.6.3;lineage4.9 None
SRR7535086 Other None
ERR987722 MDR-TB None
SRR28393273 Pre-XDR-TB lineage4.3.4.2 None
ERR4800341 HR-TB lineage3 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
ERR3797069 Other lineage4.9 None
SRR26399973 Other La3;lineage4.9 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR3283055 HR-TB lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR25534559 Sensitive lineage2.2.1.2 None
SRR6045555 Other lineage4.9 None
SRR23862011 Sensitive lineage4 None
SRR15368973 Other lineage4.9 None
SRR6045526 Other lineage4.9 None
SRR6046133 HR-TB lineage4.9 None
ERR2516366 Sensitive lineage4 be
SRR6045219 HR-TB lineage4.9 None
ERR9119525 MDR-TB lineage4.6.2.2 None
SRR6789621 Other lineage4.9 None
SRR23961558 RR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR161039 HR-TB La3;lineage4.3.4 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR1063846 HR-TB lineage4.9 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
SRR7496472 Other lineage4.9 None
ERR4820854 Other lineage4.1.2.1 None
ERR502524 MDR-TB lineage4.9;lineage6.3 None
SRR3675571 MDR-TB M.canetti;lineage4.2;lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
ERR9786525 RR-TB lineage4.1;lineage4.8 None
SRR3675221 Other lineage4.9 None
SRR21732980 Other lineage4.3.3 None
ERR323039 MDR-TB La2;lineage4.9 None
SRR1183111 HR-TB lineage4.9 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
SRR1181091 Other lineage2.2.1.1 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
SRR14066533 RR-TB lineage1.1.1 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR9786694 Other lineage4.1.2.1 None
ERR9119500 MDR-TB lineage5.2 None
SRR20969677 HR-TB La3;lineage2 None
ERR3797046 HR-TB lineage4.9 None
ERR4797201 Other lineage1.2.2.2 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
ERR4769450 Other lineage4.9 None
ERR9786601 Other lineage4.1.2.1 None
ERR3283018 HR-TB lineage4.9 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3283021 MDR-TB lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR1165667 Other lineage4.9;lineage6.3 None
ERR9786617 Other lineage4.1.1.1 None
ERR4811493 HR-TB lineage4.9 None
SRR28706412 Sensitive lineage4 None
ERR9786604 Other None
ERR9786843 Other None
SRR6789626 Other None
SRR18213713 HR-TB None
ERR9787197 Other None
SRR3675236 Other None
ERR4816999 Other None
ERR6866807 RR-TB lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
ERR4810624 MDR-TB lineage2.2 None
SRR16088278 Other lineage4.8 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR4816466 HR-TB lineage4.9 None
ERR702406 Other lineage2.1 None
SRR6044942 HR-TB lineage4.9 None
SRR1172310 MDR-TB lineage4.9 None
ERR3797061 Other La1.6;La3;lineage4.9 None
ERR3283044 Other lineage4 None
SRR1180226 HR-TB lineage4.9 None
ERR2693231 HR-TB La1.6;La3;lineage4.6.4;lineage4.9 None
SRR6045548 Other lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR12142341 HR-TB lineage2.1 None
ERR987729 MDR-TB lineage3.1.2.1;lineage3.1.2.2 None
SRR14782054 Other lineage4.9 None
ERR3797014 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR3283032 Other lineage4.9 None
ERR3797043 Sensitive lineage4.9 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR3797070 Other lineage4.9 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None