Rv0006 - c.1036_1038delCTAinsTG
Drug resistance types
1 Sensitive
6 RR-TB
18 HR-TB
10 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
80 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 20 |
| lineage4.9;lineage6.3 | 3 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 7 |
| La3;lineage4.9 | 5 |
| M.canetti;lineage1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage5.2 | 2 |
| lineage2.1;lineage4.9 | 9 |
| lineage4.3.2 | 1 |
| lineage2.2.1 | 10 |
| lineage2.2.1.1 | 4 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.1.3 | 2 |
| lineage4.8.1 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage1.2.2.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage3 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.2.1 | 7 |
| 11 | |
| La3;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.6.1.1 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage6.3.1 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.7 | 2 |
| lineage4.8 | 1 |
| lineage2.1 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage6.1.3 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.1.1.1 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 117 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675275 | Other | lineage4.9 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR6045555 | Other | lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR3797070 | Other | lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR1180147 | RR-TB | lineage2.2.1.1 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | ERR4828872 | RR-TB | lineage4.2;lineage4.9 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675311 | Other | lineage4.9 | None | SRR17658565 | Pre-XDR-TB | lineage3 | None | SRR6046594 | Other | lineage4.9 | None | ERR736863 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR3675572 | Other | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR9117709 | Other | None | ERR234659 | HR-TB | None | ERR9787197 | Other | None | SRR3675236 | Other | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | SRR3675549 | Other | lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR6046066 | Other | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR6045219 | HR-TB | lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | SRR3675571 | MDR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1180172 | RR-TB | lineage2.2.1 | None | SRR1183144 | RR-TB | lineage2.2.1 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR4815604 | Other | None | ERR2514692 | Other | None | ERR4816999 | Other | None | ERR4800341 | HR-TB | lineage3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR13423649 | Other | lineage2.2.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR212033 | Other | lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR4819932 | Other | lineage4.7 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR702406 | Other | lineage2.1 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR3675214 | Other | lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | SRR5341333 | HR-TB | lineage2.1;lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR176751 | HR-TB | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR3675457 | Other | lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR9787165 | Other | lineage6.1.3 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR6046485 | Other | lineage4.9 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR7496523 | Other | lineage4.7 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR9786671 | Other | None | ERR11252664 | Other | lineage2.2.1 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR18213713 | HR-TB | None |
|---|
