Rv2477c - c.393C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
59 Sensitive
4 RR-TB
12 HR-TB
20 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
119 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 166 |
| 4 | |
| lineage4.9 | 10 |
| lineage2.2.1;lineage4.3.3 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| lineage2.1;lineage4.9 | 2 |
| lineage3 | 1 |
| lineage2.2.1.1 | 3 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage2.2.1;lineage4.2.1 | 3 |
| lineage4.2;lineage4.9 | 3 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage2.1 | 3 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| lineage3.1.2.1;lineage4 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage4.3.4.2 | 1 |
| lineage2.2.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 215 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6484831 | Sensitive | lineage2.2.1 | None | SRR14781949 | Sensitive | lineage2.2.1 | None | ERR4407463 | HR-TB | None | SRR1173778 | Other | lineage4.9 | None | SRR28498564 | Other | lineage2.2.1 | None | SRR1166186 | Other | lineage2.2.1;lineage4.3.3 | None | SRR1146376 | MDR-TB | lineage2.2.1 | None | SRR7645934 | Sensitive | lineage2.2.1 | None | SRR14801455 | Sensitive | lineage2.2.1 | None | SRR14782294 | Other | lineage2.2.1 | None | SRR14782366 | Other | lineage2.2.1 | None | SRR7645845 | Sensitive | lineage2.2.1 | None | SRR14801468 | Sensitive | lineage2.2.1 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR14802108 | Sensitive | lineage2.2.1 | None | SRR14802198 | Other | lineage2.2.1 | None | SRR14782162 | Other | lineage2.2.1 | None | SRR6485083 | Sensitive | lineage2.2.1 | None | SRR14802028 | Sensitive | lineage2.2.1 | None | SRR14801939 | Sensitive | lineage2.2.1 | None | SRR14782445 | Other | lineage2.2.1 | None | SRR10380190 | Other | lineage2.2.1 | None | SRR14801820 | Other | lineage2.2.1 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR1173384 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR1023302 | MDR-TB | lineage3 | None | ERR13093870 | Other | lineage2.2.1 | None | SRR1166155 | Other | lineage2.2.1 | None | SRR5153900 | Sensitive | lineage2.2.1 | None | ERR4811105 | HR-TB | None | SRR14782446 | Other | lineage2.2.1 | None | SRR10380065 | Other | lineage2.2.1 | None | SRR14802214 | Other | lineage2.2.1 | None | SRR29231479 | RR-TB | lineage4.9 | None | SRR14781923 | Other | lineage2.2.1 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR14801906 | Other | lineage2.2.1 | None | SRR14781877 | Sensitive | lineage2.2.1 | None | SRR14782367 | Other | lineage2.2.1 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR14807537 | Other | lineage2.2.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR10380100 | Other | lineage2.2.1 | None | SRR14782436 | Sensitive | lineage2.2.1 | None | SRR1163490 | MDR-TB | lineage2.2.1 | None | SRR6785318 | Sensitive | lineage2.2.1 | None | SRR10380174 | Sensitive | lineage2.2.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR14807566 | Other | lineage2.2.1 | None | SRR28498513 | Other | lineage2.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR10380064 | Other | lineage2.2.1 | None | SRR23311068 | Sensitive | lineage2.2.1 | None | SRR14807585 | Sensitive | lineage2.2.1 | None | ERR2600400 | Other | lineage2.2.1 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR14801710 | Other | lineage2.2.1 | None | SRR14782238 | Sensitive | lineage2.2.1 | None | SRR28351647 | MDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR28498531 | Other | lineage2.2.1 | None | SRR28239431 | Other | lineage2.2.1 | None | SRR10380203 | Sensitive | lineage2.2.1 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR14801315 | Other | lineage2.2.1 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR14801952 | Other | lineage2.2.1 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR14782334 | Other | lineage2.2.1 | None | SRR7645883 | Sensitive | lineage2.2.1 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR14801482 | Sensitive | lineage2.2.1 | None | SRR14781933 | Sensitive | lineage2.2.1 | None | SRR28351401 | MDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR14782554 | Sensitive | lineage2.2.1 | None | SRR14782825 | Sensitive | lineage2.2.1 | None | SRR1710057 | Other | lineage2.1 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR23310822 | Sensitive | lineage2.2.1 | None | SRR1169194 | Other | lineage4.9 | None | SRR14782571 | Sensitive | lineage2.2.1 | None | SRR14802180 | Other | lineage2.2.1 | None | SRR14801331 | Sensitive | lineage2.2.1 | None | SRR1163094 | MDR-TB | lineage2.2.1 | None | SRR14782682 | Other | lineage2.2.1 | None | SRR14801348 | Sensitive | lineage2.2.1 | None | SRR7645793 | Other | lineage2.2.1 | None | SRR15368973 | Other | lineage4.9 | None | SRR14801441 | Sensitive | lineage2.2.1 | None | SRR14781873 | Other | lineage2.2.1 | None | SRR14782742 | Sensitive | lineage2.2.1 | None | SRR14782756 | Sensitive | lineage2.2.1 | None | SRR14801338 | Other | lineage2.2.1 | None | SRR14801379 | Sensitive | lineage2.2.1 | None | SRR6785331 | Sensitive | lineage2.2.1 | None | SRR14782027 | Other | lineage2.2.1 | None | SRR6785246 | Sensitive | lineage2.2.1 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR14807608 | Other | lineage2.2.1 | None | SRR14802127 | Other | lineage2.2.1 | None | SRR14801328 | Sensitive | lineage2.2.1 | None | SRR14801656 | Sensitive | lineage2.2.1 | None | SRR14807503 | Other | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR14782495 | Other | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | ERR13275994 | Sensitive | lineage2.2.1 | None | SRR1172234 | Other | lineage4.9 | None | SRR14801826 | Sensitive | lineage2.2.1 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR29539253 | Other | lineage2.2.1 | None | SRR14801894 | Other | lineage2.2.1 | None | SRR14782148 | Other | lineage2.2.1 | None | SRR7645969 | Sensitive | lineage2.2.1 | None | SRR14802176 | Other | lineage2.2.1 | None | SRR14807624 | MDR-TB | lineage2.2.1 | None | SRR14782708 | Other | lineage2.2.1 | None | ERR13273214 | Sensitive | lineage2.2.1 | None | SRR14807620 | Other | lineage2.2.1 | None | SRR10380191 | Other | lineage2.2.1 | None | SAMN02414919 | MDR-TB | lineage2.2.1 | se | SRR14802034 | Other | lineage2.2.1 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | SAMN02584607 | Other | lineage2.2.1 | md | SRR28498663 | Other | lineage2.2.1 | None | SRR7645795 | Sensitive | lineage2.2.1 | None | SRR23310990 | Other | lineage2.2.1 | None | SRR23311028 | Other | lineage2.2.1 | None | SRR1169066 | Other | lineage2.2.1 | None | SRR14782328 | Other | lineage2.2.1 | None | SRR14782389 | Other | lineage2.2.1 | None | SRR14782453 | Other | lineage2.2.1;lineage4.1.2.1 | None | SRR14782584 | Other | lineage2.2.1 | None | SRR14782676 | HR-TB | lineage2.2.1 | None | SRR14782788 | Other | lineage2.2.1 | None | SRR1173633 | Other | lineage4.9 | None | SRR14801306 | Sensitive | lineage2.2.1 | None | SRR14801353 | Other | lineage2.2.1 | None | SRR10380224 | Sensitive | lineage2.2.1 | None | SRR28351455 | Other | lineage3.1.2.1;lineage4 | None | SRR28351630 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR28498521 | Other | lineage2.2.1 | None | SRR29356653 | Other | lineage2.2.1 | None | SRR14782192 | Sensitive | lineage2.2.1 | None | SRR14782451 | Sensitive | lineage2.2.1 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR10379884 | Other | lineage2.2.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR14782418 | Sensitive | lineage2.2.1 | None | SRR14801655 | Sensitive | lineage2.2.1 | None | SRR14782124 | Other | lineage2.2.1 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR14782583 | Other | lineage2.2.1 | None | SRR14782521 | Sensitive | lineage2.2.1 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR28351222 | Other | lineage2.2.1 | None | SRR14782608 | Other | lineage2.2.1 | None | SRR3416776 | Other | lineage2.1 | None | SRR14802040 | Other | lineage2.2.1 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR23310946 | Other | lineage2.2.1 | None | SRR14782707 | Other | lineage2.2.1 | None | SRR14782644 | Sensitive | lineage2.2.1 | None | SRR24222922 | Other | lineage2.2.1 | None | ERR10762252 | MDR-TB | lineage2.2.1 | None | SRR14782169 | Other | lineage2.2.1 | None | ERR176549 | Other | lineage4.3.4.2 | None | SRR14801447 | Sensitive | lineage2.2.1 | None | ERR13290450 | MDR-TB | lineage2.2.1 | None | SRR28351405 | Other | lineage2.2.1 | None | SRR28498426 | Sensitive | lineage2.2.1 | None | ERR13290451 | MDR-TB | lineage2.2.1 | None | ERR13290452 | MDR-TB | lineage2.2.1 | None | SRR10379930 | Other | lineage2.2.1 | None | ERR4811142 | RR-TB | None | ERR4811075 | Other | None | SRR14801630 | Other | lineage2.2.1 | None | SRR14801309 | Sensitive | lineage2.2.1 | None | SRR14801477 | Other | lineage2.2.1 | None | SRR14801573 | Sensitive | lineage2.2.1 | None | ERR13290453 | MDR-TB | lineage2.2.1 | None | SRR1165699 | Other | lineage4.9 | None | SRR14782479 | Other | lineage2.2.1 | None | SRR14802185 | Other | lineage2.2.1 | None | SRR28498436 | Other | lineage2.2.1 | None | SRR7645877 | Other | lineage2.2.1 | None | SRR6485118 | Sensitive | lineage2.2.1 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR14782010 | Other | lineage2.2.1 | None | SRR28498462 | Sensitive | lineage2.2.1 | None | ERR13285737 | MDR-TB | lineage2.2.1 | None | SRR14782151 | Other | lineage2.2.1 | None | SRR29341514 | Other | lineage2.2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR19304092 | Other | lineage2.2.1 | None | SRR1144798 | MDR-TB | lineage2.2.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR1169026 | Other | lineage2.2.1;lineage4.3.3 | None | SRR14801864 | Other | lineage2.2.1 | None | SRR14802240 | Other | lineage2.2.1 | None | SRR3743436 | Other | lineage2.2.1 | None | SRR28498461 | Sensitive | lineage2.2.1 | None | ERR1023403 | MDR-TB | lineage2.2.1 | None | SRR10808730 | Other | lineage4.9 | None | ERR7911056 | Sensitive | lineage2.2.1;lineage4 | md | ERR4819157 | Other | lineage2.2.1 | gb | SRR28498444 | Other | lineage2.2.1 | None | SRR6785449 | Sensitive | lineage2.2.1 | None | SRR25395611 | Other | lineage2.2.1 | None |
|---|
