Rv3596c - c.2013C>G

Note: the variant has been searched for in a non-representative convenience dataset of samples from the ENA. This sampleset may contain overrepresentation in certain categories such as geographic source, drug resistance type and lineage. Interpretation of variant frequencies should be performed cautiously with this in mind.
Drug resistance types
9 Sensitive 4 RR-TB 15 HR-TB 10 MDR-TB 1 Pre-XDR-TB 2 XDR-TB 24 Other
lineage Counts
lineage Count
La3;lineage2.1;lineage4.9 1
La3;lineage4.9 5
La1.7;lineage4.9 2
lineage4.6.2.2 2
lineage4.9 18
lineage3 3
lineage2.2.1 5
La2;lineage4.9;lineage9 1
M.canetti;lineage4.9 1
lineage4.2;lineage4.8.1;lineage4.9 1
lineage2.2.1.1 4
lineage4.2;lineage4.9 3
1
lineage4.3.2;lineage4.9 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage3.1.2.2 1
lineage3.1.2.1 1
La1.7;lineage4.2 1
M.canetti;lineage2.2 2
lineage4.9;lineage6.3 1
M.canetti;lineage2.2.2;lineage6.2 2
La2;lineage4.9 1
lineage4.9;lineage9 2
lineage1.1.2 1
lineage4.6.3;lineage4.9 1
La1;lineage4.9 1
lineage2.1;lineage4.9;lineage6.3 1
M.canetti;lineage4.2;lineage4.9 1
spoligotype Counts
spoligotype Count
None 65
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
SRR1165628 Other La3;lineage4.9 None
SRR14801759 HR-TB La1.7;lineage4.9 None
ERR13278785 MDR-TB lineage4.6.2.2 None
SRR29050770 Sensitive lineage4.9 None
ERR4798504 RR-TB lineage3 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR7821163 Other lineage2.2.1 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
SRR29096387 Sensitive M.canetti;lineage4.9 None
ERR4816466 HR-TB lineage4.9 None
ERR176643 Other La3;lineage4.9 None
SRR29097066 Sensitive lineage4.9 None
SRR29096150 Other lineage4.9 None
ERR176751 Other lineage4.9 None
ERR3797086 Sensitive lineage4.9 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR1183106 RR-TB lineage2.2.1.1 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
ERR987722 MDR-TB None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
SRR6046397 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR11082350 MDR-TB lineage4.6.2.2 None
ERR11252736 Other lineage4.9 None
SRR16058354 Sensitive lineage3 None
SRR6046210 Other lineage4.9 None
SRR1169249 Other lineage4.9 None
SRR1169306 Other La3;lineage4.9 None
ERR4798648 MDR-TB lineage3.1.2.2 None
ERR987729 HR-TB lineage3.1.2.1 None
SRR1180172 Other lineage2.2.1 None
SRR26937107 MDR-TB lineage2.2.1 None
SRR1183111 HR-TB lineage4.9 None
SRR23961559 Other La1.7;lineage4.2 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR1180226 HR-TB lineage4.9 None
SRR1167384 Other La3;lineage4.9 None
ERR502524 HR-TB lineage4.9;lineage6.3 None
ERR4828872 Sensitive lineage4.2;lineage4.9 None
SRR1172310 HR-TB lineage4.9 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR323039 HR-TB La2;lineage4.9 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
ERR4798139 Sensitive lineage1.1.2 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR6044876 Sensitive lineage4.9 None
SRR1172885 HR-TB lineage4.9 None
SRR1181091 Other lineage2.2.1.1 None
SRR29097026 Other lineage4.9 None
SRR1184024 RR-TB lineage2.2.1.1 None
SRR1180147 Other lineage2.2.1.1 None
SRR1183144 Other lineage2.2.1 None
SRR29097037 Other lineage4.9 None
SRR26159047 Other lineage4.6.3;lineage4.9 None
ERR11252612 Other La3;lineage4.9 None
ERR4818536 Other lineage4.9 None
ERR4769497 Other La1;lineage4.9 None
SRR6046295 HR-TB lineage4.2;lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR9125676 Sensitive lineage3 None
SRR23961558 Other lineage2.1;lineage4.9;lineage6.3 None
SRR29096410 Other lineage4.9 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None