EBG00000313339 - n.404T>C
Drug resistance types
15 Sensitive
2 RR-TB
17 HR-TB
7 MDR-TB
0 Pre-XDR-TB
1 XDR-TB
29 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 24 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.4.1.1 | 1 |
| lineage6.1.1 | 2 |
| lineage4.6.2.2 | 2 |
| lineage2.2.1 | 5 |
| lineage3 | 1 |
| lineage2.2.1.1 | 4 |
| La3;lineage4.9 | 5 |
| M.canetti;lineage4.9 | 1 |
| lineage4.2;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La1.7;lineage4.9 | 2 |
| La2;lineage4.9 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage4.3 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| 2 | |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage3.1;lineage9 | 1 |
| La1.7 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.5 | 1 |
| lineage4.9.1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 71 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29096410 | Other | lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR400345 | Other | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR1181328 | Other | lineage2.2.1 | None | SRR6045371 | Other | lineage4.9 | None | SRR17832802 | HR-TB | lineage3 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR176751 | Other | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR176740 | Other | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR29097037 | Other | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR1169249 | Other | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR867542 | HR-TB | lineage4.3 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR987722 | MDR-TB | None | ERR212033 | Other | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | SRR3675222 | Other | La1.7 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR6045219 | HR-TB | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR245758 | Other | lineage4.9.1 | None | SRR3675548 | Sensitive | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR4812155 | Other | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None |
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