Rv0006 - c.1575C>T
Drug resistance types
89 Sensitive
6 RR-TB
18 HR-TB
9 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
61 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 3 |
| lineage7 | 78 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| lineage1.1.1.1 | 1 |
| La1.7;M.canetti;lineage4.9 | 4 |
| lineage4.9 | 44 |
| lineage4.3.2.1 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La1.7;lineage4.9 | 5 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage2.2.1.1 | 4 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| lineage4.8;lineage4.9 | 2 |
| La1.8.1 | 2 |
| M.canetti;lineage4.6.4;lineage4.9 | 2 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.5 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.7 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage2.2.1.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| 1 | |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage1.1.2 | 1 |
| lineage1;lineage4.9 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.4.2 | 1 |
| La1.7.1;lineage4.9 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage4.3.3 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 184 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR756347 | Sensitive | lineage7 | None | ERR756348 | Sensitive | lineage7 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | DRR261097 | Sensitive | lineage1.1.1.1 | None | ERR2704711 | Sensitive | lineage7 | None | ERR756346 | Sensitive | lineage7 | None | ERR1971853 | Other | lineage7 | et | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR1200613 | Sensitive | lineage7 | et | ERR124636 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR1971870 | Sensitive | lineage7 | et | ERR233354 | Sensitive | lineage7 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR1971852 | Sensitive | lineage7 | et | ERR1971866 | Other | lineage7 | et | SRR5341308 | Sensitive | lineage4.9 | None | ERR1200602 | Sensitive | lineage7 | et | SRR27332343 | Sensitive | lineage7 | None | ERR1971876 | Sensitive | lineage7 | et | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR6046485 | Other | lineage4.9 | None | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR234681 | Sensitive | lineage7 | None | ERR1200619 | Sensitive | lineage7 | et | ERR1200608 | Sensitive | lineage7 | et | ERR3283055 | HR-TB | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR7240108 | Other | La1.8.1 | None | ERR11049146 | Sensitive | lineage7 | None | ERR3439432 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR233355 | Sensitive | lineage7 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR1971849 | Sensitive | lineage7 | et | ERR752229 | Other | lineage4.5 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR1971858 | Sensitive | lineage7 | et | ERR159958 | Sensitive | lineage7 | None | ERR1971855 | Sensitive | lineage7 | et | ERR7737753 | MDR-TB | lineage7 | None | ERR11044943 | Sensitive | lineage7 | None | SRR5535933 | Other | lineage4.9 | None | ERR1200639 | Sensitive | lineage7 | et | ERR1200625 | Sensitive | lineage7 | et | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR1971854 | Sensitive | lineage7 | et | ERR1971857 | Other | lineage7 | et | ERR233346 | Sensitive | lineage7 | None | ERR11043150 | Sensitive | lineage7 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR4830353 | Other | La1.7 | None | ERR4798099 | Other | lineage4.9 | None | ERR216965 | Sensitive | lineage4.9 | None | ERR1200631 | Sensitive | lineage7 | et | SRR3675446 | RR-TB | lineage4.9 | None | ERR756345 | Sensitive | lineage7 | None | ERR1971860 | Sensitive | lineage7 | et | ERR1971865 | Sensitive | lineage7 | et | ERR2704695_ERR2704711_ERR2704710 | Sensitive | lineage7 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR1200604 | Sensitive | lineage7 | et | SRR7496471 | Sensitive | lineage4 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR11068585 | Sensitive | lineage7 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR1200635 | Sensitive | lineage7 | et | ERR1023509 | Other | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | ERR3323719 | Sensitive | lineage7 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | ERR181435 | Sensitive | lineage7 | dj | ERR3797046 | HR-TB | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR1971864 | Sensitive | lineage7 | et | SRR5341299 | HR-TB | lineage4.9 | None | ERR1200623 | Sensitive | lineage7 | et | ERR4797264 | Sensitive | lineage4.9 | None | ERR756344 | Sensitive | lineage7 | None | ERR2704710 | Sensitive | lineage7 | None | ERR1971877 | Other | lineage7 | et | ERR233349 | Other | lineage7 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR11068109 | Sensitive | lineage7 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR4814968 | Sensitive | lineage7 | gb | SRR1158918 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR1063896 | Sensitive | None | ERR1200617 | Other | lineage7 | et | SRR1159378 | Other | lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR1200606 | Sensitive | lineage7 | et | ERR1200634 | Sensitive | lineage7 | et | ERR1200618 | Sensitive | lineage7 | None | ERR1971873 | Sensitive | lineage7 | et | ERR181887 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR159959 | Other | lineage7 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR1971856 | Other | lineage7 | et | ERR1971850 | Sensitive | lineage7 | et | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SAMEA4791119 | Sensitive | lineage7 | au | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR1971868 | Other | lineage7 | et | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR13267563 | Sensitive | lineage7 | None | ERR1200612 | Sensitive | lineage7 | et | DRR188519 | Other | lineage4.4.2 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | ERR1971867 | Other | lineage7 | et | SRR1183144 | Other | lineage2.2.1 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR1971862 | Sensitive | lineage7 | et | ERR1971872 | Sensitive | lineage7 | et | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR1200624 | Sensitive | lineage7 | et | ERR400415 | Sensitive | lineage7 | gb | ERR4811857 | Sensitive | lineage4.3.3 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR1971871 | Sensitive | lineage7 | et | ERR1971869 | Other | lineage7 | et | ERR1200636 | Other | lineage7 | et | ERR1971859 | Sensitive | lineage7 | et | ERR1971874 | Sensitive | lineage7 | et | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR1971861 | Sensitive | lineage7 | et | ERR1971863 | Sensitive | lineage7 | et | SRR3675222 | Other | La1.7 | None | ERR1200640 | Sensitive | lineage7 | et | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR4819975 | Sensitive | lineage7 | None | SRR18911237 | Sensitive | lineage7 | None | ERR1200633 | Sensitive | lineage7 | et | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR1200610 | Sensitive | lineage7 | et | ERR1200603 | Sensitive | lineage7 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR9970980 | HR-TB | lineage4.1.2 | None |
|---|
