Run ID: ERR1200631
Sample name:
Date: 21-10-2023 13:28:38
Number of reads: NA
Percentage reads mapped: NA
Strain: lineage7
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage7 | Lineage 7 | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8876 | c.1575C>T | synonymous_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9357 | p.Thr686Ala | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763690 | c.321C>T | synonymous_variant | 1.0 |
rpoC | 764013 | p.Glu215Ala | missense_variant | 1.0 |
rpoC | 766955 | p.Glu1196Lys | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776202 | p.Gly760Ala | missense_variant | 1.0 |
mmpL5 | 777724 | p.His253Tyr | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781488 | c.-72G>A | upstream_gene_variant | 1.0 |
fbiC | 1305129 | c.2199C>T | synonymous_variant | 1.0 |
embR | 1417096 | c.252T>G | synonymous_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472379 | n.534T>G | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472382 | n.537G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474866 | n.1209C>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474959 | n.1303_1304insAC | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475129 | n.1472G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475154 | n.1497C>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.22 |
rpsA | 1834916 | p.Thr459Pro | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918281 | c.342A>C | synonymous_variant | 1.0 |
ndh | 2102218 | c.825C>T | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2169232 | p.Thr461Ala | missense_variant | 1.0 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
Rv2752c | 3065880 | c.312C>T | synonymous_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448540 | p.Gly13Ser | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 0.99 |
fbiA | 3640361 | c.-182A>G | upstream_gene_variant | 1.0 |
rpoA | 3878040 | c.468T>C | synonymous_variant | 1.0 |
embC | 4240153 | c.291G>A | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
embB | 4248073 | c.1560C>T | synonymous_variant | 1.0 |
aftB | 4267649 | c.1188T>C | synonymous_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
ethA | 4328371 | c.-898C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |