Rv3805c - c.1188T>C
Drug resistance types
47 Sensitive
6 RR-TB
25 HR-TB
71 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
54 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage7 | 77 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 6 |
| La3;M.canetti;lineage2.1;lineage4.9 | 10 |
| lineage4.1.2.1 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 13 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage2.1;lineage4.9 | 7 |
| lineage4.4.1.1.1 | 3 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| La3;lineage4.9 | 3 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 5 |
| M.canetti;lineage2.1;lineage6.3 | 2 |
| lineage4.6.4;lineage4.9 | 1 |
| lineage2.2.1 | 2 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.3.4.2.1 | 1 |
| lineage4.9 | 12 |
| lineage4.9;lineage6.3 | 2 |
| 4 | |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| La3;M.canetti;lineage2.2.1 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage4.8 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage3 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage2.2.1;lineage6.3 | 1 |
| La3;lineage4.3.4 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.2 | 1 |
| La3;M.canetti;lineage3.1 | 1 |
| M.canetti;lineage2.1;lineage3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 1 |
| lineage2.2 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| lineage2.1 | 1 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| lineage4.1.1.3 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4 | 1 |
| lineage2.1;lineage4.3.2 | 1 |
| M.canetti;lineage2.1 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 204 |
Geographic prevalence
Country level data for this variant is available for 50 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR11068109 | Sensitive | lineage7 | None | ERR5311098 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR323063 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR1163221 | MDR-TB | lineage4.1.2.1 | None | ERR233346 | Sensitive | lineage7 | None | ERR11043150 | Sensitive | lineage7 | None | ERR5311089 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1971865 | Other | lineage7 | et | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341333 | HR-TB | lineage2.1;lineage4.9 | None | SRR3675506 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1971853 | Other | lineage7 | et | SRR6982504 | Sensitive | lineage4.4.1.1.1 | None | ERR176658 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR386953 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR1971862 | Other | lineage7 | et | ERR159959 | Other | lineage7 | None | ERR1971856 | Other | lineage7 | et | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6325442 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR1035162 | MDR-TB | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR1200612 | Sensitive | lineage7 | et | ERR1971854 | Other | lineage7 | et | ERR126600 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR1971871 | Other | lineage7 | et | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR4188322 | Other | lineage4.6.4;lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR1971876 | Other | lineage7 | et | ERR11049146 | Sensitive | lineage7 | None | ERR2704710 | Sensitive | lineage7 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR3675515 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1971872 | Other | lineage7 | et | ERR1200623 | Sensitive | lineage7 | et | SRR11662690 | HR-TB | lineage4.9 | None | ERR323038 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR1200624 | Sensitive | lineage7 | et | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR234659 | HR-TB | None | SRR28119805 | Other | lineage4.9 | None | ERR1971869 | Other | lineage7 | et | ERR1971861 | Other | lineage7 | et | ERR1200608 | Sensitive | lineage7 | et | ERR1200636 | Other | lineage7 | et | ERR1971873 | Other | lineage7 | et | ERR1200640 | Sensitive | lineage7 | et | ERR2515187 | Sensitive | lineage4.4.1.1.1 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR8976043 | MDR-TB | lineage2.1;lineage2.2;lineage6.3 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR1200617 | Other | lineage7 | et | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR3675322 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR18911237 | Other | lineage7 | None | ERR4817735 | Other | lineage4.8 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR1167384 | Other | La3;lineage4.9 | None | ERR234681 | Sensitive | lineage7 | None | ERR1971858 | Other | lineage7 | et | ERR756348 | Sensitive | lineage7 | None | ERR4814968 | Sensitive | lineage7 | gb | ERR990545 | RR-TB | lineage3 | None | ERR1200631 | Sensitive | lineage7 | et | ERR323047 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR323060 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6896212 | Sensitive | lineage4.4.1.1.1 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR2704695_ERR2704711_ERR2704710 | Sensitive | lineage7 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675486 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR5311096 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR1971860 | Other | lineage7 | et | ERR323036 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR1971852 | Other | lineage7 | et | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1200635 | Sensitive | lineage7 | et | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | SRR5341418 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR1971874 | Other | lineage7 | et | ERR1971866 | Other | lineage7 | et | SRR27332343 | Sensitive | lineage7 | None | ERR4819975 | Sensitive | lineage7 | None | SRR3675450 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR1200634 | Sensitive | lineage7 | et | ERR502889 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR126608 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR3675508 | MDR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR473314 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None | ERR1200610 | Sensitive | lineage7 | et | ERR4814536 | MDR-TB | M.canetti;lineage2.1;lineage3 | None | SRR3675554 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR133986 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR400415 | Sensitive | lineage7 | gb | SRR7535086 | Other | None | ERR4816999 | Other | None | ERR1971850 | Other | lineage7 | et | ERR1200619 | Sensitive | lineage7 | et | ERR323040 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR233355 | Sensitive | lineage7 | None | ERR756344 | Sensitive | lineage7 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR6325445 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR176766 | MDR-TB | lineage2.1;lineage4.9 | None | ERR1971864 | Other | lineage7 | et | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR1200618 | Sensitive | lineage7 | None | ERR3323719 | Sensitive | lineage7 | None | ERR1971870 | Other | lineage7 | et | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR11068585 | Sensitive | lineage7 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR212033 | Other | lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR1971855 | Other | lineage7 | et | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR1971849 | Other | lineage7 | et | SRR3675558 | MDR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR3675561 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR1971857 | Other | lineage7 | et | SRR6325448 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR2704711 | Sensitive | lineage7 | None | ERR756346 | Sensitive | lineage7 | None | SRR3675545 | RR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR1971863 | Other | lineage7 | et | ERR176643 | Other | La3;lineage4.9 | None | ERR1200613 | Sensitive | lineage7 | et | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR038268 | MDR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | ERR756347 | Sensitive | lineage7 | None | ERR323058 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR1873393 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4816551 | MDR-TB | lineage4.1.1.3 | None | ERR1971868 | Other | lineage7 | et | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR756345 | Sensitive | lineage7 | None | SAMEA4791119 | Sensitive | lineage7 | au | SRR1184294 | Other | lineage4.9 | None | ERR6358837 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR159958 | Sensitive | lineage7 | None | ERR5311079 | MDR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR4816478 | HR-TB | lineage4 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR233354 | Sensitive | lineage7 | None | ERR4816656 | Other | lineage4.9 | None | ERR1200602 | Sensitive | lineage7 | et | ERR772255 | MDR-TB | lineage2.1;lineage4.3.2 | None | ERR181435 | Sensitive | lineage7 | dj | ERR323041 | MDR-TB | M.canetti;lineage2.1 | None | ERR1200625 | Sensitive | lineage7 | et | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR1180137 | RR-TB | lineage2.2.1 | None | ERR1971867 | Other | lineage7 | et | ERR1200604 | Sensitive | lineage7 | et | SRR6045952 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR736863 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR11044943 | Sensitive | lineage7 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR1184381 | MDR-TB | None | ERR1971877 | Other | lineage7 | et | ERR233349 | Other | lineage7 | None | ERR1200606 | Sensitive | lineage7 | et | ERR1971859 | Other | lineage7 | et | ERR278594 | MDR-TB | lineage2.1;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR1200633 | Sensitive | lineage7 | et | ERR1200603 | Sensitive | lineage7 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | ERR124652 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR1200639 | Sensitive | lineage7 | et | ERR7737753 | MDR-TB | lineage7 | None |
|---|
