Run ID: ERR1200602
Sample name:
Date: 13-08-2022 02:35:14
Number of reads: 9649275
Percentage reads mapped: 97.84
Strain: lineage7
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage7 | Lineage 7 | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7799 | c.498A>C | synonymous_variant | 0.12 |
gyrA | 8445 | p.Arg382Gly | missense_variant | 0.19 |
gyrA | 8876 | c.1575C>T | synonymous_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575309 | c.-39C>G | upstream_gene_variant | 0.25 |
mshA | 576184 | c.837A>C | synonymous_variant | 0.2 |
rpoC | 762836 | c.-534C>G | upstream_gene_variant | 0.19 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 764013 | p.Glu215Ala | missense_variant | 1.0 |
rpoC | 764725 | p.Phe452Leu | missense_variant | 0.14 |
rpoC | 764751 | p.Val461Gly | missense_variant | 0.23 |
rpoC | 766955 | p.Glu1196Lys | missense_variant | 1.0 |
rpoC | 767305 | p.Tyr1312* | stop_gained | 0.21 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776202 | p.Gly760Ala | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781488 | c.-72G>A | upstream_gene_variant | 1.0 |
fbiC | 1305129 | c.2199C>T | synonymous_variant | 1.0 |
Rv1258c | 1406358 | p.Ile328Thr | missense_variant | 0.15 |
embR | 1416232 | p.Cys372Gly | missense_variant | 0.12 |
embR | 1416977 | p.His124Arg | missense_variant | 1.0 |
rrs | 1471658 | n.-188T>G | upstream_gene_variant | 0.14 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473343 | n.1498G>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474380 | n.723G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474959 | n.1303_1304insAC | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673449 | p.Thr4Pro | missense_variant | 0.24 |
rpsA | 1834916 | p.Thr459Pro | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918281 | c.342A>C | synonymous_variant | 1.0 |
ndh | 2102218 | c.825C>T | synonymous_variant | 1.0 |
ndh | 2102891 | p.Phe51Ser | missense_variant | 0.15 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167871 | c.2742G>C | synonymous_variant | 0.13 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2169232 | p.Thr461Ala | missense_variant | 1.0 |
PPE35 | 2169379 | p.Phe412Val | missense_variant | 0.17 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2290023 | c.-782A>C | upstream_gene_variant | 0.3 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
kasA | 2518891 | c.777C>A | synonymous_variant | 0.15 |
eis | 2714366 | p.Val323Leu | missense_variant | 0.15 |
ahpC | 2726737 | p.Asp182Ala | missense_variant | 0.2 |
ahpC | 2726756 | c.564C>G | synonymous_variant | 0.21 |
folC | 2747218 | p.Ile127Met | missense_variant | 0.14 |
pepQ | 2859381 | c.1038C>G | synonymous_variant | 0.13 |
ribD | 2987392 | p.Arg185Pro | missense_variant | 0.18 |
Rv2752c | 3064552 | p.Arg547Pro | missense_variant | 0.17 |
Rv2752c | 3064741 | p.Gly484Ala | missense_variant | 0.17 |
Rv2752c | 3065265 | c.927C>G | synonymous_variant | 0.19 |
Rv2752c | 3065880 | c.312C>T | synonymous_variant | 1.0 |
thyX | 3067995 | c.-50A>C | upstream_gene_variant | 0.14 |
thyA | 3074172 | c.300G>T | synonymous_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339550 | p.Gly145Trp | missense_variant | 0.15 |
Rv3083 | 3448540 | p.Gly13Ser | missense_variant | 1.0 |
Rv3083 | 3448929 | p.Tyr142* | stop_gained | 0.14 |
Rv3083 | 3449058 | p.Ser185Arg | missense_variant | 0.24 |
Rv3083 | 3449673 | p.Tyr390* | stop_gained | 0.23 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
fprA | 3475280 | p.Val425Gly | missense_variant | 0.23 |
fbiB | 3641955 | p.Gly141Arg | missense_variant | 0.17 |
alr | 3840268 | p.Thr385Pro | missense_variant | 0.19 |
alr | 3841504 | c.-84C>G | upstream_gene_variant | 0.13 |
rpoA | 3877766 | p.Ala248Pro | missense_variant | 0.2 |
rpoA | 3878040 | c.468T>C | synonymous_variant | 1.0 |
rpoA | 3878601 | c.-94C>G | upstream_gene_variant | 0.3 |
rpoA | 3878641 | c.-135delG | upstream_gene_variant | 0.13 |
ddn | 3987013 | p.Gly57Ala | missense_variant | 0.21 |
clpC1 | 4039680 | p.Phe342Ser | missense_variant | 0.19 |
clpC1 | 4039932 | p.Gly258Val | missense_variant | 0.23 |
embC | 4240153 | c.291G>A | synonymous_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embC | 4240922 | p.Thr354Ala | missense_variant | 1.0 |
embC | 4241056 | c.1194C>G | synonymous_variant | 0.24 |
embC | 4241456 | p.Ala532Pro | missense_variant | 0.26 |
embC | 4241783 | p.Trp641Gly | missense_variant | 0.29 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.16 |
embA | 4243977 | p.Ala249Pro | missense_variant | 0.23 |
embA | 4244375 | c.1143C>G | synonymous_variant | 0.24 |
embA | 4245946 | p.Ile905Thr | missense_variant | 0.16 |
embA | 4246423 | p.Val1064Gly | missense_variant | 0.2 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
embB | 4248073 | c.1560C>T | synonymous_variant | 1.0 |
embB | 4248725 | p.Ser738Ala | missense_variant | 0.19 |
aftB | 4267649 | c.1188T>C | synonymous_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
ethA | 4327672 | c.-199G>A | upstream_gene_variant | 0.17 |
ethA | 4328371 | c.-898C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4408329 | c.-127C>G | upstream_gene_variant | 0.14 |