Rv3596c - c.2385G>C
Drug resistance types
2 Sensitive
9 RR-TB
37 HR-TB
7 MDR-TB
1 Pre-XDR-TB
2 XDR-TB
69 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 5 |
| lineage4.1.1.1 | 2 |
| lineage4.9 | 34 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| La1.7;lineage4.9 | 8 |
| lineage1.2.1.2 | 1 |
| La1;lineage4.1.2 | 1 |
| lineage4.9;lineage7 | 4 |
| lineage2.1 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| M.canetti;lineage2.2 | 2 |
| 10 | |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2 | 3 |
| lineage2.1;lineage4.9 | 11 |
| lineage4 | 1 |
| lineage4.4.1.1 | 1 |
| M.canetti;lineage4.9 | 2 |
| La1;lineage4.9 | 1 |
| lineage4.1.3 | 2 |
| lineage4.1.2.1 | 4 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage2.2.1.1 | 3 |
| lineage3 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.6.1.1 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.3.2 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La1.7 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.7 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage3.1.2.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 127 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046382 | RR-TB | lineage2.2.1 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR176779 | HR-TB | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR4815604 | Other | None | SRR6789626 | Other | None | ERR11252736 | Other | lineage4.9 | None | SRR18213713 | HR-TB | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR3675275 | Other | lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR3675214 | Other | lineage4.9 | None | SRR5341333 | HR-TB | lineage2.1;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR3675582 | Other | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR3675280 | RR-TB | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | SRR3675311 | Other | lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR5341456 | Other | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | SRR3675572 | Other | None | ERR9117709 | Other | None | ERR9787197 | Other | None | SRR3675236 | Other | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR4800341 | HR-TB | lineage3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR3675555 | MDR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR5341330 | Other | lineage4.9 | None | SRR3675539 | MDR-TB | lineage4.9;lineage7 | None | ERR702406 | Other | lineage2.1 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR26159047 | RR-TB | lineage4.6.3;lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | SRR3675495 | RR-TB | lineage2.1;lineage4.9 | None | SRR6046066 | Other | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR1035122 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR736865 | MDR-TB | lineage4.3.2;lineage4.9 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR3797070 | Other | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR4830353 | HR-TB | La1.7 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR1180147 | RR-TB | lineage2.2.1.1 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1180172 | RR-TB | lineage2.2.1 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR7496509 | Other | None | ERR4818615 | Sensitive | None | SRR7535086 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR387051 | RR-TB | lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None |
|---|
