Rv0668 - c.1059G>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
15 Sensitive
5 RR-TB
33 HR-TB
5 MDR-TB
12 Pre-XDR-TB
1 XDR-TB
10 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.4 | 1 |
| lineage2.2.1 | 20 |
| lineage2.2.1.1;lineage4 | 1 |
| lineage4.9 | 11 |
| lineage2.2.2 | 11 |
| lineage2.2;lineage4 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage2;lineage4.9 | 1 |
| lineage4.3.3 | 1 |
| lineage4.5 | 1 |
| lineage2.2.1;lineage4 | 2 |
| lineage2.2.1;lineage2.2.2 | 4 |
| lineage4.8 | 1 |
| La1.7.1 | 1 |
| lineage2.2.1.1 | 6 |
| lineage4 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage4.3.4.1 | 1 |
| lineage3 | 3 |
| lineage4.1.1.3 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage4.2.1.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 81 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR16278274 | Other | La1.4 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR1013599 | HR-TB | lineage2.2.1.1;lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR1183144 | Other | lineage2.2.1 | None | ERR3797081 | Sensitive | lineage4.9 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | SRR1048992 | HR-TB | lineage2.2;lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | SRR1013621 | Pre-XDR-TB | lineage2.2.2 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR1048991 | HR-TB | lineage2;lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR1013582 | Pre-XDR-TB | lineage2.2.1 | None | ERR2446566 | Other | lineage4.9 | None | SRR1013607 | HR-TB | lineage2.2.2 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360585 | HR-TB | lineage4.5 | None | SRR1013617 | Sensitive | lineage2.2.1;lineage4 | None | SRR1048870 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR19303788 | Sensitive | lineage4.8 | None | SRR21469201 | Other | La1.7.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1013610 | Sensitive | lineage4 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR1049026 | HR-TB | lineage2.2;lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR1048994 | HR-TB | lineage4.9 | None | SRR1013596 | Sensitive | lineage3 | None | SRR1048869 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR9786076 | Sensitive | lineage3 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR6046250 | Other | lineage4.9 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR1048969 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1048965 | HR-TB | lineage2.2.1 | None | SRR1013609 | Sensitive | lineage4 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | SRR1013597 | Sensitive | lineage2.2.2;lineage4 | None | SRR1013577 | HR-TB | lineage2.2.2 | None | SRR14782163 | HR-TB | lineage4.2.1.1 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1048868 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048885 | HR-TB | lineage2.2;lineage4 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048982 | HR-TB | lineage2.2.1.1 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SAMN02360571 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | SAMN02360577 | HR-TB | lineage3 | None | ERR400336 | Sensitive | lineage4.9 | None | SAMN02398710 | MDR-TB | lineage2.2.2 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None |
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