Rv0668 - c.39T>C


Drug resistance types
72 Sensitive 7 RR-TB 74 HR-TB 24 MDR-TB 5 Pre-XDR-TB 2 XDR-TB 110 Other
lineage Counts
lineage Count
lineage4.9 122
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
La1.7;lineage4.2 1
lineage4.9;lineage6.3 1
lineage2.2.1 18
lineage2.2.1.1 4
La1.7;M.canetti;lineage4.9 3
M.canetti;lineage4.2 1
lineage4.1.2.1 4
lineage1.1.1;lineage4 1
La1.2.BCG 1
lineage4.3.4.2.1 3
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
La1.7;lineage4.9 9
La1.8.1 2
lineage2.1;lineage4.9;lineage7 1
lineage2.2.1.2;lineage7 1
lineage4.5 2
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 3
4
La1.7.X-unk4;lineage4.9 1
La2;lineage2.2 1
lineage2.2 5
La1.6;La3;M.canetti;lineage4.2.2 1
M.canetti;lineage4.2;lineage4.9 2
La1.6;La3;lineage4.6.4;lineage4.9 1
lineage1.2.1.1 1
La1.7;lineage3.1;lineage4 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage4.6.2.2 2
La1;lineage2;lineage4.9 1
lineage4.2;lineage4.8.1;lineage4.9 2
M.canetti;lineage1 1
lineage4.1.1.3 1
lineage4.9;lineage9 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
M.canetti;lineage4.9 7
lineage4.2;lineage4.6.3;lineage4.9.1 2
La1;lineage4.9 2
lineage1.1.3.1 1
lineage4.8 3
La1;lineage4.1.2 1
lineage2.2.1.2 2
lineage4.9;lineage7 3
lineage2.2.1;lineage4.1.2.1 1
La3;lineage2.1;lineage4.9;lineage6.3 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
lineage4.8;lineage4.9 2
lineage4.6.3;lineage4.9 2
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage4.2;lineage4.9 2
M.canetti;lineage2.2 2
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
M.canetti;lineage4.6.4;lineage4.9 1
lineage1;lineage4.9 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
La1.7 2
lineage4.6.1.1 1
lineage4.2.1.1;lineage4.3.3 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
lineage4.1.2 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
lineage3 2
La2;lineage4.9 1
lineage2.1;lineage4.9 1
lineage4.1.1.2 1
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La3;lineage4.3.4 1
lineage2.1;lineage4.1.4;lineage4.9 1
lineage4 5
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
lineage4.1;lineage4.8 1
lineage4.2;lineage4.6.3;lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
lineage4.2.1 1
lineage2.1;lineage4.9;lineage6.3 1
La3;lineage4.9 1
lineage4.1;lineage4.9 1
M.canetti;lineage4.9;lineage9 1
M.canetti;lineage2.2.2;lineage6.2 2
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
lineage4.3.1;lineage4.9;lineage6 1
lineage1.1.2 1
La1.6;La3;lineage4.9 1
lineage4.3.2.1 1
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
spoligotype Counts
spoligotype Count
None 294
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR736834 Sensitive lineage4.9 None
SRR3675234 Other La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR5341418 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
SRR23961559 Other La1.7;lineage4.2 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR6045892 Sensitive lineage4.9 None
SRR9971112 Other lineage2.2.1 None
SRR1180147 Other lineage2.2.1.1 None
SRR1183144 Other lineage2.2.1 None
SRR29017081 Sensitive lineage4.9 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
ERR2041725 MDR-TB lineage4.1.2.1 None
SRR1183145 Other lineage2.2.1 None
SRR1183106 RR-TB lineage2.2.1.1 None
SRR3675585 Sensitive lineage4.9 None
ERR6359082 Other lineage4.9 None
ERR4796929 Sensitive lineage4.9 None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
SRR5341299 HR-TB lineage4.9 None
SRR6046485 Other lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
SRR1180270 Other lineage2.2.1 None
ERR736831 Other lineage4.9 None
SRR5341469 HR-TB lineage4.9 None
ERR11465510 Sensitive lineage4.3.4.2.1 None
ERR4797264 Sensitive lineage4.9 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
ERR4797313 Sensitive lineage2.2.1 None
ERR212034 HR-TB La1.7;lineage4.9 None
SRR5431730 Other La1.8.1 None
SRR3675555 HR-TB lineage2.1;lineage4.9;lineage7 None
SRR6045503 Sensitive lineage4.9 None
SRR1180137 Other lineage2.2.1 None
ERR4818929 HR-TB lineage4.9 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
ERR4769444 HR-TB lineage4.9 None
ERR752229 Other lineage4.5 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
ERR736872 HR-TB lineage4.9 None
SRR3675385 Other La1.7;lineage4.9 None
ERR4811031 Sensitive lineage4.5 None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR1063896 Sensitive None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
SRR1183049 RR-TB lineage2.2 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
SRR1159378 Other lineage4.9 None
SRR6046046 Other lineage4.9 None
ERR4820773 HR-TB lineage4.9 None
SRR3675550 RR-TB M.canetti;lineage4.2;lineage4.9 None
ERR736837 Pre-XDR-TB lineage4.9 None
ERR2693231 Other La1.6;La3;lineage4.6.4;lineage4.9 None
SRR6045548 Sensitive lineage4.9 None
SRR3675455 Sensitive lineage4.9 None
SRR1181020 Other lineage2.2.1 None
SRR3675279 Sensitive lineage4.9 None
ERR323115 Sensitive lineage4.9 None
ERR4814734 Other lineage1.2.1.1 None
ERR2446566 Other lineage4.9 None
SRR6046133 HR-TB lineage4.9 None
SRR3675235 Sensitive lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
SRR29050859 Other lineage4.9 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR6045219 HR-TB lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
SRR11662694 Other lineage4.9 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR067699 Sensitive La1;lineage2;lineage4.9 None
ERR6359069 Sensitive lineage4.9 None
SRR10315567 HR-TB lineage2.2.1 None
ERR294266 HR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR15014655 Other M.canetti;lineage1 None
ERR6359074 HR-TB lineage4.9 None
SRR6046245 Other lineage4.9 None
SRR6789624 HR-TB lineage4.1.1.3 None
SRR6046720 HR-TB lineage4.9;lineage9 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
SRR6511621 Sensitive lineage4.9 None
ERR4815441 HR-TB lineage4.9 None
ERR1035162 Other M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR20970043 MDR-TB lineage2.2.1 None
ERR1023525 HR-TB La1.7;lineage4.9 None
SRR3675260 Sensitive lineage4.9 None
ERR3283021 HR-TB lineage4.9 None
ERR4819877 HR-TB lineage4.9 None
ERR212138 HR-TB lineage4.9 None
SRR29096387 Sensitive M.canetti;lineage4.9 None
ERR4816466 HR-TB lineage4.9 None
SRR3675541 Sensitive lineage4.9 None
SRR3675387 Other lineage4.9 None
SRR3675229 Sensitive lineage4.9 None
ERR3290633 Other lineage4.2;lineage4.6.3;lineage4.9.1 None
SRR29097066 Sensitive lineage4.9 None
ERR133825 HR-TB La1;lineage4.9 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR3797047 MDR-TB lineage4.9 None
SRR6046824 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR3675246 Other lineage4.9 None
SRR9970979 Sensitive lineage4.8 None
SRR5341308 Sensitive lineage4.9 None
SRR9970978 Sensitive La1;lineage4.1.2 None
ERR176751 Other lineage4.9 None
SRR1172796 Sensitive lineage2.2.1.2 None
ERR4831117 HR-TB lineage4.9;lineage7 None
SRR26937107 MDR-TB lineage2.2.1 None
ERR11488822 Pre-XDR-TB lineage2.2.1;lineage4.1.2.1 None
SRR5341467 Other lineage4.9 None
SRR1173777 Sensitive lineage4.9 None
ERR4799513 HR-TB lineage2.2 None
SRR1184024 RR-TB lineage2.2.1.1 None
ERR323085 Sensitive lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR4024991 Other lineage4.8;lineage4.9 None
SRR11662690 HR-TB lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
SRR20970016 Other lineage2.2 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
ERR6359070 Sensitive lineage4.9 None
ERR176560 HR-TB La1.7;lineage4.9 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
ERR4769442 Sensitive lineage4.9 None
ERR502889 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR6046295 HR-TB lineage4.2;lineage4.9 None
ERR3283055 HR-TB lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR19295647 Sensitive lineage4.9 None
SRR3675539 HR-TB lineage4.9;lineage7 None
SRR6045555 Other lineage4.9 None
SRR6046397 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR6046382 Sensitive lineage2.2.1 None
ERR2693252 Sensitive lineage4.9 None
SRR6045217 Sensitive lineage4.9 None
ERR4796254 Sensitive lineage4.9 None
SRR3675586 Other M.canetti;lineage4.6.4;lineage4.9 None
ERR4797350 Sensitive lineage1;lineage4.9 None
ERR323062 Sensitive lineage4.9 None
ERR4819241 Other lineage4.9 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
ERR4828872 Sensitive lineage4.2;lineage4.9 None
ERR137286 Other lineage4.9 None
ERR323066 Sensitive lineage4.9 None
SRR3675222 Other La1.7 None
ERR4811030 Sensitive lineage4.9 None
ERR4810624 MDR-TB lineage2.2 None
ERR6358755 Other lineage4.6.1.1 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
ERR3283024 Other La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
SRR1175127 Other lineage2.2.1.2 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR161034 HR-TB lineage4.3.4.2.1 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR502511 Sensitive lineage4.9 None
ERR400320 Sensitive lineage4.9 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR9970980 HR-TB lineage4.1.2 None
ERR323108 HR-TB La1.7;lineage4.9 None
ERR4178309 Other lineage4.1.2.1 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR702405 Sensitive lineage4.9 None
ERR2026697 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
SRR17658565 Pre-XDR-TB lineage3 None
SRR3675473 Sensitive lineage4.9 None
ERR4830353 Other La1.7 None
ERR4798099 Other lineage4.9 None
ERR4799025 Other lineage4.8 None
SRR6046492 Other lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
ERR9786444 Sensitive lineage4.8 None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR10809074 Sensitive lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
ERR502510 Sensitive lineage4.9 None
ERR400345 Other lineage4.9 None
SRR6045347 Other lineage4.9 None
SRR6046897 Sensitive lineage4.9 None
ERR4818252 Sensitive lineage4.1.1.2 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR4769450 Other lineage4.9 None
ERR124636 Sensitive lineage4.9 None
ERR161039 HR-TB La3;lineage4.3.4 None
ERR161037 Other lineage4.9 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
ERR400326 Other lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
ERR2041726 MDR-TB lineage4.1.2.1 None
ERR400336 Sensitive lineage4.9 None
SRR6045371 Other lineage4.9 None
ERR751326 Other lineage4.9 None
SRR6045399 Other M.canetti;lineage4.9 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR7535086 Other None
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR4817731 HR-TB lineage4.9 None
ERR4799378 Sensitive lineage4.9 None
ERR4816478 HR-TB lineage4 None
ERR1035122 Sensitive lineage4.9 None
SRR8217918 HR-TB lineage4.9 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
SRR6046594 Sensitive lineage4.9 None
ERR2660539 Other lineage4.9 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
ERR3797046 HR-TB lineage4.9 None
SRR3675488 Other La1.7;lineage4.9 None
ERR13230594 Sensitive lineage2.2.1 None
ERR4769452 Other lineage4.9 None
SRR6045233 Other M.canetti;lineage4.9 None
ERR9786843 Other None
SRR3675390 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR5341387 Other lineage4.9 None
ERR212001 HR-TB None
ERR4797474 Sensitive lineage4.9 None
ERR4819422 HR-TB lineage4.9 None
ERR6866022 Other lineage4.8;lineage4.9 None
ERR9786525 Other lineage4.1;lineage4.8 None
SRR3675477 Sensitive lineage4.9 None
SRR6046878 Other lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR5311097 Sensitive lineage4.2;lineage4.6.3;lineage4.9 None
ERR133986 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR2512770 Sensitive lineage4.2.1 None
SRR23961558 Other lineage2.1;lineage4.9;lineage6.3 None
SRR7236177 Other La1.8.1 None
SRR7535082 Sensitive lineage4.9 None
ERR181744 HR-TB La3;lineage4.9 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
SRR9971114 Other lineage2.2.1 None
ERR4769439 HR-TB lineage4.9 None
ERR4798431 Sensitive lineage4.1;lineage4.9 None
ERR2026698 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR387051 Other lineage4.9 None
SRR12142339 HR-TB lineage2.2.1 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR5311079 Other La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR3675501 Other La1.7;lineage4.9 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR6045053 Other lineage4 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
SRR20969708 HR-TB lineage2.2 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
SRR5341310 Other lineage1.1.2 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR20969731 Other lineage2.2.1 None
ERR3797061 Other La1.6;La3;lineage4.9 None
SRR5341300 HR-TB lineage4.9 None
SRR3675267 Other La1.7;lineage4.9 None
ERR736856 Sensitive lineage4.9 None
SRR14782054 Other lineage4.9 None
SRR5341330 Other lineage4.9 None
ERR4769521 RR-TB lineage4.9 None
SRR6046593 Other lineage4.9 None
ERR6865502 Sensitive lineage4 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
SRR14801749 HR-TB lineage4.9 None
ERR4178226 Sensitive lineage4 None
ERR4797184 Sensitive lineage4.9 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR6865513 Other lineage4.1.2.1 None
SRR5341461 HR-TB lineage4.9 None
ERR4819933 Sensitive lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
SRR29231479 RR-TB lineage4.9 None
ERR3273109 HR-TB lineage4 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
ERR3283032 Other lineage4.9 None
ERR990545 Other lineage3 None
ERR323037 Other lineage4.9 None
SRR5341453 Other lineage4.9 None
SRR1181091 Other lineage2.2.1.1 None
ERR4812155 Other lineage4.9 None
SRR12416842 HR-TB lineage4.9 None
ERR6866639 Other lineage4.9 None
ERR4816656 Other lineage4.9 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
SRR3675449 Other M.canetti;lineage4.9 None
SRR14782405 HR-TB lineage4.9 None
SRR1180172 Other lineage2.2.1 None
SRR6045706 Sensitive lineage4.9 None
ERR779852 Sensitive lineage4.9 None