Rv0667 - c.3027C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
45 Sensitive
4 RR-TB
45 HR-TB
10 MDR-TB
3 Pre-XDR-TB
2 XDR-TB
33 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1;lineage4.9 | 1 |
| lineage4.9 | 72 |
| lineage4.4.1.2 | 1 |
| lineage3.1.2.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage3 | 6 |
| lineage1.1.2 | 2 |
| lineage2.2.1 | 6 |
| La1.7;lineage4.9 | 2 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.6.2.2 | 2 |
| lineage4.1.2 | 2 |
| lineage2.2.1.1 | 3 |
| 3 | |
| lineage4 | 3 |
| lineage4.2;lineage4.9 | 3 |
| M.canetti;lineage2.2 | 2 |
| La1.8.1 | 1 |
| lineage4.2.1 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.9;lineage9 | 2 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La1.7.1;lineage4.9 | 1 |
| lineage3.1.2.1 | 1 |
| lineage4.3.2.1 | 1 |
| La1.2.BCG | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.3.4 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.1 | 1 |
| La1;lineage4.9 | 2 |
| La1.7.1 | 1 |
| lineage1.1.3.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 142 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR990545 | Other | lineage3 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR5341453 | Other | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR5341467 | Other | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | ERR987722 | MDR-TB | None | SRR28351339 | MDR-TB | lineage4 | None | ERR181824 | HR-TB | lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | SRR14801522 | Sensitive | lineage4.2.1 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR1063896 | Sensitive | None | SRR28498503 | Sensitive | lineage4.2.1 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR4798139 | Sensitive | lineage1.1.2 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR9786525 | Other | lineage4 | None | ERR3273109 | HR-TB | lineage4 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR13267133 | Pre-XDR-TB | lineage3 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR28351540 | Pre-XDR-TB | lineage3 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR4195665 | Sensitive | lineage3 | None | ERR502511 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR926158 | Sensitive | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR9786526 | Other | lineage4.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR926163 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR1180172 | Other | lineage2.2.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR2510608 | MDR-TB | lineage3 | pk | ERR779852 | Sensitive | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | ERR9786843 | Other | None | ERR926165 | Sensitive | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None |
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