Rv0667 - c.468G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
27 Sensitive
6 RR-TB
16 HR-TB
13 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
31 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage3 | 4 |
| lineage4.9 | 31 |
| La3;lineage4.9 | 8 |
| lineage4.6.2.2 | 2 |
| lineage4 | 1 |
| lineage4.1.2.1 | 2 |
| lineage3.1.2.1 | 1 |
| lineage2.2.1 | 8 |
| lineage1.1.2 | 1 |
| lineage2.2.1.1 | 4 |
| 3 | |
| lineage4.9;lineage7 | 3 |
| lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.1.1.3 | 2 |
| lineage6.1.1 | 2 |
| M.canetti;lineage4.9 | 1 |
| lineage4.2;lineage4.9 | 3 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;lineage4 | 1 |
| La2;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.9;lineage9 | 2 |
| lineage4.1 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage2.2 | 1 |
| lineage3.1.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 93 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | SRR3675582 | Other | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR9786525 | Other | lineage4 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR926163 | Other | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR926164 | Other | lineage4.9 | None | SRR29231411 | Sensitive | lineage1.1.2 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR1180270 | Other | lineage2.2.1 | None | ERR9786843 | Other | None | ERR987722 | MDR-TB | None | ERR3797079 | Sensitive | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR1035346 | MDR-TB | lineage4.1.2.1 | br | ERR387051 | Other | lineage4.9 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR12006550 | Sensitive | None | ERR926159 | Sensitive | lineage4.9 | None | SRR17832802 | HR-TB | lineage3 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR29096150 | Other | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | SRR6044780 | Sensitive | lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | ERR736848 | Other | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR9786526 | Other | lineage4.1 | None | ERR9896144 | Other | lineage3 | None | ERR990545 | Other | lineage3 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR176740 | Other | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None |
|---|
