lineage | Count |
---|---|
lineage2.2.1 | 33 |
lineage3 | 6 |
lineage2.2.1;lineage4 | 1 |
lineage2.2.2 | 5 |
lineage2.2.1.1 | 10 |
lineage1.1.2 | 1 |
lineage4.3.4.2 | 5 |
lineage4.1.2.1 | 3 |
lineage4.2.2.2 | 4 |
lineage2.2.1.2 | 1 |
lineage2.2.1.1;lineage3 | 1 |
lineage2.2.1;lineage3 | 1 |
lineage3.1.2.1 | 2 |
lineage4.9 | 20 |
lineage4.1.1.3 | 1 |
lineage4.2.1 | 1 |
lineage4 | 2 |
lineage4.3.3 | 1 |
lineage4.2.2.1 | 2 |
lineage4.8 | 4 |
lineage2.2;lineage3 | 1 |
lineage1.1.3.1 | 1 |
La1.4 | 1 |
lineage2.2.1;lineage4.9 | 1 |
lineage4.4 | 1 |
lineage4.4.1.1.1 | 1 |
spoligotype | Count |
---|---|
None | 110 |
ID | Drug resistance | Lineage | Country iso2 | SRR18715489 | Pre-XDR-TB | lineage2.2.1 | None | ERR2516746 | MDR-TB | lineage3 | gb | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR10610353 | Pre-XDR-TB | lineage2.2.2 | None | ERR4800394 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4800562 | Pre-XDR-TB | lineage2.2.1.1 | in | SRR25827577 | MDR-TB | lineage2.2.1.1 | None | SRR3082094 | Pre-XDR-TB | lineage1.1.2 | None | ERR7911036 | MDR-TB | lineage2.2.1 | md | SRR10869058 | MDR-TB | lineage2.2.1 | None | ERR11798608 | MDR-TB | lineage2.2.1 | None | SRR29230992 | MDR-TB | lineage4.3.4.2 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | SRR29289171 | Pre-XDR-TB | lineage3 | None | SRR8651615 | Pre-XDR-TB | lineage2.2.2 | cn | DRR130075 | MDR-TB | lineage2.2.1 | None | SRR29289429 | XDR-TB | lineage4.2.2.2 | None | SRR15465769 | MDR-TB | lineage2.2.1.2 | None | SRR25827693 | MDR-TB | lineage2.2.1.1;lineage3 | None | SRR25827440 | XDR-TB | lineage2.2.1;lineage3 | None | ERR4553710 | MDR-TB | lineage3.1.2.1 | None | SRR29096599 | MDR-TB | lineage2.2.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | ERR13266861 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR29289389 | XDR-TB | lineage4.2.2.2 | None | ERR144542 | Pre-XDR-TB | lineage2.2.1 | ru | SRR1181351 | Sensitive | lineage4.9 | None | ERR4809037 | Pre-XDR-TB | lineage4.1.1.3 | za | SRR6256972 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4800613 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR16157050 | MDR-TB | lineage2.2.1 | None | ERR4797965 | XDR-TB | lineage2.2.1 | in | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR13191093 | MDR-TB | lineage2.2.2 | None | SRR29231792 | MDR-TB | lineage4.3.4.2 | None | SRR28498360 | MDR-TB | lineage4.2.1 | None | SRR11567812 | Pre-XDR-TB | lineage2.2.2 | None | SRR29289390 | XDR-TB | lineage4.2.2.2 | None | ERR4798809 | Pre-XDR-TB | lineage2.2.1 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR13261073 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799841 | MDR-TB | lineage2.2.1 | in | SRR5486878 | MDR-TB | lineage4.1.2.1 | None | SRR1181349 | Sensitive | lineage4 | None | ERR4798326 | MDR-TB | lineage2.2.1.1 | in | ERR7975657 | MDR-TB | lineage2.2.1 | None | ERR13258461 | MDR-TB | lineage2.2.1 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR25827490 | XDR-TB | lineage2.2.1 | None | SRR25389454 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR11773740 | Pre-XDR-TB | lineage4.3.3 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR9806662 | Pre-XDR-TB | lineage2.2.2 | None | ERR2516576 | MDR-TB | lineage4 | pe | SRR1180312 | Sensitive | lineage4.9 | None | SRR25827367 | MDR-TB | lineage2.2.1.1 | None | SRR29289403 | XDR-TB | lineage4.2.2.2 | None | ERR2516715 | MDR-TB | lineage4.2.2.1 | nl | SRR16157047 | Pre-XDR-TB | lineage2.2.1 | None | SRR6153007 | Sensitive | lineage2.2.1 | ca | ERR1873475 | Pre-XDR-TB | lineage4.1.2.1 | za | ERR2041763 | MDR-TB | lineage4.2.2.1 | rs | SRR1180391 | Sensitive | lineage4.9 | None | ERR9992830 | XDR-TB | lineage2.2.1 | None | ERR4797800 | MDR-TB | lineage4.8 | in | SRR3105774 | MDR-TB | lineage3 | None | SRR16157048 | Pre-XDR-TB | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR29289406 | Pre-XDR-TB | lineage3 | None | ERR5918014 | MDR-TB | lineage2.2.1 | None | ERR13261958 | Pre-XDR-TB | lineage2.2;lineage3 | None | SRR29093814 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266904 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR29539251 | HR-TB | lineage2.2.1 | None | ERR2707209 | MDR-TB | lineage4.3.4.2 | cd | SRR29017702 | MDR-TB | lineage1.1.3.1 | None | SRR29093421 | MDR-TB | lineage2.2.1 | None | SRR29289258 | Pre-XDR-TB | lineage3 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR28706439 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR29289373 | XDR-TB | lineage2.2.1 | None | ERR2653199 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR4800573 | Pre-XDR-TB | lineage2.2.1 | in | SRR28044344 | Pre-XDR-TB | lineage4.4 | None | SRR4423165 | Pre-XDR-TB | lineage3.1.2.1 | None | SRR28351269 | Pre-XDR-TB | lineage2.2.1 | None | SRR7585432 | Pre-XDR-TB | lineage3 | in | ERR4797191 | XDR-TB | lineage2.2.1 | in | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR4796823 | MDR-TB | lineage2.2.1.1 | in | ERR2706989 | MDR-TB | lineage4.3.4.2 | cd | ERR4798043 | MDR-TB | lineage4.8 | in | ERR4769444 | HR-TB | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR4809358 | RR-TB | lineage2.2.1.1 | za | SRR1180375 | Sensitive | lineage4.9 | None | ERR4798091 | MDR-TB | lineage4.8 | in | ERR9992776 | MDR-TB | lineage2.2.1 | None | SRR25827792 | XDR-TB | lineage2.2.1 | None |
---|