Run ID: ERR2516576
Sample name:
Date: 31-03-2023 21:37:08
Number of reads: 3761079
Percentage reads mapped: 99.73
Strain: lineage4
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
rrs | 1473246 | n.1401A>G | non_coding_transcript_exon_variant | 1.0 | kanamycin, capreomycin, aminoglycosides, amikacin |
fabG1 | 1673423 | c.-17G>T | upstream_gene_variant | 1.0 | isoniazid, ethionamide |
pncA | 2288752 | p.Ser164Pro | missense_variant | 1.0 | pyrazinamide |
embB | 4247429 | p.Met306Leu | missense_variant | 1.0 | ethambutol |
ethA | 4327484 | c.-11A>G | upstream_gene_variant | 1.0 | ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6737 | p.Thr500Ala | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoB | 761889 | p.Val695Leu | missense_variant | 1.0 |
rpoC | 765612 | p.His748Pro | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rplC | 801009 | c.201A>G | synonymous_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2155321 | p.Ala264Val | missense_variant | 1.0 |
PPE35 | 2169320 | p.Leu431Phe | missense_variant | 0.3 |
Rv1979c | 2223214 | c.-50A>C | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ribD | 2987307 | p.Ala157Pro | missense_variant | 0.12 |
Rv2752c | 3065517 | c.675C>T | synonymous_variant | 1.0 |
thyA | 3073806 | c.666C>G | synonymous_variant | 0.22 |
Rv3083 | 3448439 | c.-64delA | upstream_gene_variant | 1.0 |
fprA | 3474299 | p.Asp98Gly | missense_variant | 1.0 |
rpoA | 3878580 | c.-74_-73insCA | upstream_gene_variant | 0.25 |
rpoA | 3878595 | c.-88C>T | upstream_gene_variant | 0.62 |
clpC1 | 4038857 | c.1848C>A | synonymous_variant | 0.13 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
ubiA | 4269116 | p.Arg240Cys | missense_variant | 1.0 |
ethA | 4328317 | c.-844C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |