Rv2043c - p.Ser164Pro
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
3 HR-TB
81 MDR-TB
120 Pre-XDR-TB
15 XDR-TB
3 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 177 |
| lineage4.1.1.3 | 8 |
| lineage3 | 3 |
| lineage4.9 | 1 |
| lineage4.1.2.1 | 16 |
| lineage4.3.3 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4 | 1 |
| lineage4.5 | 1 |
| lineage3.1.1 | 1 |
| lineage4.8 | 1 |
| lineage4.2.1 | 3 |
| lineage1.2.2.2;lineage2.2.1 | 1 |
| lineage3.1 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.2.2.1 | 1 |
| lineage4.1.1 | 1 |
| lineage2.2.1;lineage2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 222 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29093460 | Pre-XDR-TB | lineage2.2.1 | None | ERR13276251 | Pre-XDR-TB | lineage2.2.1 | None | ERR9806943 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR551628 | MDR-TB | lineage2.2.1 | None | SRR29539757 | Pre-XDR-TB | lineage2.2.1 | None | ERR8773985 | MDR-TB | lineage2.2.1 | None | SRR5341438 | Other | lineage3 | None | ERR13284565 | MDR-TB | lineage2.2.1 | None | SRR8791268 | Other | lineage4.9 | None | ERR8025647 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR3335767 | MDR-TB | lineage3 | pk | SRR29273876 | XDR-TB | lineage4.1.2.1 | None | SRR16156279 | MDR-TB | lineage2.2.1 | None | ERR10748568 | MDR-TB | lineage2.2.1 | None | ERR5865732 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025423 | Pre-XDR-TB | lineage2.2.1 | None | SRR18714932 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539657 | Pre-XDR-TB | lineage4.3.3 | None | SRR10379940 | MDR-TB | lineage2.2.1 | None | SRR27069388 | XDR-TB | lineage2.2.1.1 | None | SRR29055583 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256058 | MDR-TB | lineage2.2.1 | None | SRR8335313 | Pre-XDR-TB | lineage2.2.1 | None | ERR9993213 | MDR-TB | lineage2.2.1 | None | ERR7911617 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911669 | Pre-XDR-TB | lineage2.2.1 | za | ERR5918007 | MDR-TB | lineage2.2.1 | za | ERR7911708 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR2516576 | MDR-TB | lineage4 | pe | ERR5987183 | MDR-TB | lineage2.2.1 | None | ERR5987344 | MDR-TB | lineage2.2.1 | None | SRR24255879 | Pre-XDR-TB | lineage2.2.1 | None | ERR5987236 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865919 | MDR-TB | lineage2.2.1 | None | ERR8025531 | Pre-XDR-TB | lineage2.2.1 | None | SRR6832434 | Pre-XDR-TB | lineage2.2.1 | None | ERR2677440 | Pre-XDR-TB | lineage2.2.1 | de | SRR24256176 | MDR-TB | lineage2.2.1 | None | ERR9992724 | XDR-TB | lineage2.2.1 | None | SRR16156210 | MDR-TB | lineage2.2.1 | None | SRR10525334 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR16088323 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662446 | MDR-TB | lineage4.5 | None | SRR16088326 | Pre-XDR-TB | lineage2.2.1 | None | SRR25389443 | MDR-TB | lineage2.2.1 | None | SRR16156691 | Pre-XDR-TB | lineage2.2.1 | None | ERR11049813 | Pre-XDR-TB | lineage2.2.1 | None | SRR25389535 | MDR-TB | lineage2.2.1 | None | ERR5758343 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865905 | Pre-XDR-TB | lineage2.2.1 | None | SRR8426713 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025449 | Pre-XDR-TB | lineage2.2.1 | None | ERR11049921 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156682 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869231 | Pre-XDR-TB | lineage2.2.1 | None | SRR28435000 | Pre-XDR-TB | lineage2.2.1 | None | ERR13288851 | XDR-TB | lineage2.2.1 | None | SRR13243567 | XDR-TB | lineage2.2.1 | None | SRR16156233 | MDR-TB | lineage2.2.1 | None | ERR2245301 | MDR-TB | lineage3.1.1 | no | ERR3794414 | MDR-TB | lineage2.2.1 | None | DRR130189 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082395 | Pre-XDR-TB | lineage2.2.1 | None | SRR23938677 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093808 | MDR-TB | lineage2.2.1 | None | SRR29096608 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715279 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273919 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR25389444 | MDR-TB | lineage2.2.1 | None | SRR29273862 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR9119775 | MDR-TB | lineage2.2.1 | None | ERR2432988 | MDR-TB | lineage4.1.2.1 | br | SRR10869289 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273897 | Pre-XDR-TB | lineage4.8 | None | SRR26937064 | MDR-TB | lineage2.2.1 | None | SRR16157040 | Pre-XDR-TB | lineage2.2.1 | None | ERR13289385 | HR-TB | lineage2.2.1 | None | ERR9119839 | MDR-TB | lineage2.2.1 | None | ERR13284398 | MDR-TB | lineage2.2.1 | None | ERR8025757 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119698 | Pre-XDR-TB | lineage2.2.1 | None | ERR9806950 | Pre-XDR-TB | lineage2.2.1 | None | SRR22873607 | XDR-TB | lineage2.2.1 | None | SRR28498552 | MDR-TB | lineage4.2.1 | None | SRR28923841 | XDR-TB | lineage2.2.1 | None | ERR9992898 | XDR-TB | lineage1.2.2.2;lineage2.2.1 | None | ERR9119836 | MDR-TB | lineage2.2.1 | None | SRR3743437 | Pre-XDR-TB | lineage4.2.1 | None | ERR13266129 | Pre-XDR-TB | lineage2.2.1 | None | SRR7592382 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR16156713 | Pre-XDR-TB | lineage2.2.1 | None | ERR13276364 | Pre-XDR-TB | lineage2.2.1 | None | SRR26937013 | Pre-XDR-TB | lineage2.2.1 | None | ERR4827590 | Pre-XDR-TB | lineage2.2.1 | None | ERR4024920 | MDR-TB | lineage4.1.1.3 | None | ERR4813748 | MDR-TB | lineage4.1.2.1 | None | SRR25389532 | MDR-TB | lineage2.2.1 | None | ERR8665850 | MDR-TB | lineage2.2.1 | None | ERR4831603 | Pre-XDR-TB | lineage2.2.1.1 | vn | ERR5979428 | MDR-TB | lineage3.1 | None | ERR4813976 | MDR-TB | lineage4.1.2.1 | br | SRR8353274 | MDR-TB | lineage2.2.1 | None | ERR7911560 | Pre-XDR-TB | lineage2.2.1 | za | ERR4828131 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665957 | Pre-XDR-TB | lineage2.2.1 | None | SRR24710225 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911647 | Pre-XDR-TB | lineage2.2.1 | za | ERR1873558 | Pre-XDR-TB | lineage2.2.1 | za | ERR1873559 | Pre-XDR-TB | lineage2.2.1 | za | ERR1873450 | Pre-XDR-TB | lineage2.2.1 | za | SRR5341320 | Other | lineage3 | in | SRR29093857 | Pre-XDR-TB | lineage2.2.1 | None | ERR4828005 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284967 | MDR-TB | lineage2.2.1 | None | SRR10869316 | Pre-XDR-TB | lineage2.2.1 | None | ERR6866036 | MDR-TB | lineage4.1.1.3 | None | SRR16156710 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156675 | Pre-XDR-TB | lineage2.2.1 | None | SRR25389536 | MDR-TB | lineage2.2.1 | None | ERR4011082 | MDR-TB | lineage2.2.1 | None | SRR16156213 | MDR-TB | lineage2.2.1 | None | SRR25389425 | MDR-TB | lineage2.2.1 | None | ERR9992831 | XDR-TB | lineage2.2.1 | None | ERR9993068 | XDR-TB | lineage2.2.1 | None | ERR4829376 | Pre-XDR-TB | lineage2.2.1 | it | ERR5918020 | XDR-TB | lineage2.2.1 | za | ERR5865306 | MDR-TB | lineage2.2.1 | None | SRR9738479 | XDR-TB | lineage4.1.2.1 | None | SRR22757407 | MDR-TB | lineage2.2.1 | None | SRR13232432 | Pre-XDR-TB | lineage2.2.1 | None | SRR24222954 | Pre-XDR-TB | lineage2.2.1 | None | ERR4276851 | Pre-XDR-TB | lineage2.2.1 | None | ERR4827479 | Pre-XDR-TB | lineage2.2.1 | None | SRR25389440 | MDR-TB | lineage2.2.1 | None | SRR29093341 | Pre-XDR-TB | lineage2.2.1 | None | SRR10430347 | MDR-TB | lineage2.2.1 | None | SRR29093958 | Pre-XDR-TB | lineage2.2.1 | None | ERR11083028 | MDR-TB | lineage2.2.1 | None | SRR24256222 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273792 | MDR-TB | lineage4.1.2.1 | None | ERR13289499 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869032 | MDR-TB | lineage2.2.1 | None | ERR4011074 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865918 | MDR-TB | lineage2.2.1 | None | ERR10748102 | MDR-TB | lineage2.2.1 | None | SRR29056293 | Pre-XDR-TB | lineage2.2.1 | None | SRR29538985 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869135 | Pre-XDR-TB | lineage2.2.1 | None | ERR11083050 | Pre-XDR-TB | lineage2.2.1 | None | ERR1873405 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9119899 | MDR-TB | lineage2.2.1 | None | SRR29050655 | MDR-TB | lineage4.3.4.1 | None | SRR10303318 | MDR-TB | lineage2.2.1 | None | ERR9806972 | Pre-XDR-TB | lineage2.2.1 | None | ERR11069072 | Pre-XDR-TB | lineage2.2.1 | None | SRR6914121 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093985 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093520 | MDR-TB | lineage2.2.1 | None | ERR13260503 | HR-TB | lineage2.2.1 | None | SRR7592328 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR26936937 | MDR-TB | lineage2.2.1 | None | SRR29289353 | MDR-TB | lineage2.2.1 | None | SRR24466801 | XDR-TB | lineage4.1.2.1 | None | ERR4011089 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715471 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865917 | MDR-TB | lineage2.2.1 | None | ERR4011069 | Pre-XDR-TB | lineage2.2.1 | None | SRR8426601 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830107 | MDR-TB | lineage2.2.1 | tj | SRR29055824 | Pre-XDR-TB | lineage2.2.1 | None | ERR4828967 | MDR-TB | lineage2.2.1 | None | ERR4813961 | MDR-TB | lineage4.1.2.1 | br | SRR6807689 | Pre-XDR-TB | lineage4.2.1 | None | ERR5918012 | XDR-TB | lineage2.2.1 | za | ERR5987239 | MDR-TB | lineage2.2.1 | None | ERR8665956 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911630 | Pre-XDR-TB | lineage2.2.1 | za | ERR8699105 | MDR-TB | lineage2.2.1 | None | ERR4831238 | Pre-XDR-TB | lineage2.2.1 | de | ERR3323716 | Pre-XDR-TB | lineage2.2.1 | None | ERR11049316 | Pre-XDR-TB | lineage2.2.1 | None | ERR3639715 | MDR-TB | lineage2.2.1 | None | ERR9119862 | MDR-TB | lineage2.2.1 | None | ERR2515322 | Pre-XDR-TB | lineage2.2.1 | za | ERR2041746 | MDR-TB | lineage4.2.2.1 | rs | ERR10748432 | MDR-TB | lineage2.2.1 | None | ERR10748148 | XDR-TB | lineage2.2.1 | None | ERR8773961 | Pre-XDR-TB | lineage2.2.1 | None | ERR9806873 | Pre-XDR-TB | lineage2.2.1 | None | SRR25389441 | MDR-TB | lineage2.2.1 | None | SRR28393922 | MDR-TB | lineage4.1.1 | None | SRR16370531 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043518 | Pre-XDR-TB | lineage2.2.1 | None | ERR9806981 | Pre-XDR-TB | lineage2.2.1 | None | ERR13288732 | MDR-TB | lineage2.2.1 | None | ERR3794482 | MDR-TB | lineage2.2.1 | None | ERR13288733 | Pre-XDR-TB | lineage2.2.1;lineage2.2.2 | None | ERR9806978 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10869048 | Pre-XDR-TB | lineage2.2.1 | None | SRR9738476 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR1873413 | Pre-XDR-TB | lineage2.2.1 | None | ERR6362764 | MDR-TB | lineage2.2.1 | None | SRR29273819 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR9806922 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088557 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082398 | MDR-TB | lineage2.2.1 | None | SRR29050885 | MDR-TB | lineage4.3.4.1 | None | ERR13261162 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034646 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR5987414 | MDR-TB | lineage2.2.1 | None | SRR25389533 | MDR-TB | lineage2.2.1 | None | SRR8362612 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093535 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156197 | MDR-TB | lineage2.2.1 | None | ERR5865307 | MDR-TB | lineage2.2.1 | None | ERR13276349 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093543 | Pre-XDR-TB | lineage2.2.1 | None | ERR11044607 | Pre-XDR-TB | lineage2.2.1 | None | ERR2653157 | MDR-TB | lineage4.1.2.1 | None | SRR29093659 | Pre-XDR-TB | lineage2.2.1 | None | SRR29356714 | Pre-XDR-TB | lineage2.2.1 | None | ERR13260504 | HR-TB | lineage2.2.1 | None |
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