Rv0668 - c.3018C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
12 Sensitive
5 RR-TB
14 HR-TB
33 MDR-TB
11 Pre-XDR-TB
0 XDR-TB
21 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 8 |
| 2 | |
| lineage1.1.1 | 1 |
| lineage2.2.1 | 44 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage4.2;lineage4.9 | 2 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.6.4;lineage4.9 | 2 |
| lineage3.1.2.1;lineage4 | 1 |
| lineage4.1.1.3 | 2 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage4.9;lineage7 | 2 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.6.1 | 1 |
| lineage3 | 2 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| La1.4 | 1 |
| La3;lineage4.9 | 1 |
| lineage1.1.2 | 2 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage3.1.2.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 96 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR13285191 | Sensitive | lineage4.9 | None | SRR7535086 | Other | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR11662524 | MDR-TB | lineage2.2.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR1023509 | Other | lineage4.9 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR11662161 | MDR-TB | lineage2.2.1 | None | ERR11488822 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR11662621 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | SRR11662432 | MDR-TB | lineage2.2.1 | None | SRR11662304 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR718459 | HR-TB | lineage2.2.1 | th | ERR752257 | HR-TB | lineage2.2.1 | th | SRR28351488 | MDR-TB | lineage2.2.1 | None | ERR4822463 | Sensitive | lineage2.2.1 | de | ERR4822422 | Sensitive | lineage2.2.1 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR11662172 | MDR-TB | lineage2.2.1 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR11662156 | MDR-TB | lineage2.2.1 | None | SRR12072590 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR28351455 | Other | lineage3.1.2.1;lineage4 | None | ERR4796577 | HR-TB | None | ERR4816322 | Other | lineage4.9 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR11662247 | MDR-TB | lineage2.2.1 | None | SRR11662577 | MDR-TB | lineage2.2.1 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR11662134 | MDR-TB | lineage2.2.1 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR11662209 | MDR-TB | lineage2.2.1 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | SRR12072587 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662625 | MDR-TB | lineage2.2.1 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR2660539 | Other | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | SRR11662464 | MDR-TB | lineage2.2.1 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR29096773 | HR-TB | lineage2.2.1 | None | SRR11662657 | MDR-TB | lineage2.2.1 | None | SRR16278274 | Other | La1.4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR28119827 | Other | La3;lineage4.9 | None | SRR6832787 | Sensitive | lineage2.2.1 | None | SRR11662542 | MDR-TB | lineage2.2.1 | None | SRR12072603 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR751663 | Sensitive | lineage2.2.1 | th | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR4822487 | Sensitive | lineage2.2.1 | None | ERR752078 | HR-TB | lineage2.2.1 | th | ERR4822547 | Sensitive | lineage2.2.1 | None | ERR768040 | Sensitive | lineage2.2.1 | th | SRR28045108 | Sensitive | lineage1.1.2 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR5710014 | Pre-XDR-TB | lineage2.2.1 | th | SRR5709772 | MDR-TB | lineage2.2.1 | th | SRR5709963 | MDR-TB | lineage2.2.1 | th | SRR5709768 | MDR-TB | lineage2.2.1 | th | SRR5709996 | Pre-XDR-TB | lineage2.2.1 | th | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR13285192 | Sensitive | lineage4.9 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | SRR11662265 | MDR-TB | lineage2.2.1 | None | ERR3439432 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR11662259 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662658 | MDR-TB | lineage2.2.1 | None | SRR23316613 | HR-TB | lineage2.2.1 | None | SRR11662556 | MDR-TB | lineage2.2.1 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | SRR21733183 | RR-TB | lineage1.1.2 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4816852 | Other | lineage4.9 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | SRR11662154 | MDR-TB | lineage2.2.1 | None | SRR13423649 | Sensitive | lineage2.2.1 | None |
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