Rv0005 - c.933C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
39 Sensitive
2 RR-TB
25 HR-TB
8 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
65 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.4 | 44 |
| lineage4.9 | 39 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.1.2.1 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage3 | 2 |
| lineage1.1.1 | 5 |
| La3;lineage4.9 | 8 |
| La1;lineage4.9 | 1 |
| lineage2.2.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.9;lineage9 | 2 |
| La1.8.1 | 2 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage3.1.2.2 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.3 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage5.1.4 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage3.1.2.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| 1 | |
| lineage4.9;lineage7 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 140 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR16278235 | Other | La1.4 | None | SRR16278260 | Other | La1.4 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR1175496 | Sensitive | lineage4.9 | None | SRR16278276 | Other | La1.4 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR16278225 | Other | La1.4 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR6046210 | Other | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR16278237 | Other | La1.4 | None | SRR16278239 | Other | La1.4 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR16278256 | Other | La1.4 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR16278277 | Other | La1.4 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR16278271 | Other | La1.4 | None | ERR4798504 | RR-TB | lineage3 | None | ERR752275 | Sensitive | lineage1.1.1 | th | ERR3283011 | Other | La3;lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | SRR16278227 | Other | La1.4 | None | SRR16278274 | Other | La1.4 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR16278284 | Other | La1.4 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR16278248 | Other | La1.4 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR16278278 | Other | La1.4 | None | SRR29097037 | Other | lineage4.9 | None | ERR718196 | Sensitive | lineage1.1.1 | th | SRR28044633 | Sensitive | lineage1.1.2 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR752037 | Sensitive | lineage1.1.1 | th | ERR751790 | Sensitive | lineage1.1.1 | th | ERR3797087 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR16278220 | Other | La1.4 | None | SRR16278291 | Other | La1.4 | None | SRR29096410 | Other | lineage4.9 | None | SRR16278257 | Other | La1.4 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR16278247 | Other | La1.4 | None | SRR16278245 | Other | La1.4 | None | SRR16278289 | Other | La1.4 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR16278221 | Other | La1.4 | None | ERR3797067 | Other | La1.8.1 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR1175508 | Sensitive | lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR16278261 | Other | La1.4 | None | SRR16278241 | Other | La1.4 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR16278273 | Other | La1.4 | None | SRR16278223 | Other | La1.4 | None | SRR16278242 | Other | La1.4 | None | SRR16278231 | Other | La1.4 | None | SRR16278281 | Other | La1.4 | None | SRR16278259 | Other | La1.4 | None | SRR3675387 | Other | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR29097026 | Other | lineage4.9 | None | SRR16278244 | Other | La1.4 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR768016 | Sensitive | lineage1.1.1 | th | SRR1180226 | HR-TB | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR16278240 | Other | La1.4 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR16278268 | Other | La1.4 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR16278258 | Other | La1.4 | None | SRR16278285 | Other | La1.4 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | SRR16278263 | Other | La1.4 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR3797019 | Other | La1.8.1 | None | SRR16278272 | Other | La1.4 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR16278232 | Other | La1.4 | None | SRR16278229 | Other | La1.4 | None | SRR16278287 | Other | La1.4 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR16278236 | Other | La1.4 | None | SRR16278267 | Other | La1.4 | None | SRR16278228 | Other | La1.4 | None | SRR16278233 | Other | La1.4 | None | ERR176740 | Other | lineage4.9 | None | SRR16278226 | Other | La1.4 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR987722 | MDR-TB | None | SRR28044873 | Pre-XDR-TB | lineage3 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None |
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