Rv3245c - c.-530G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
26 Sensitive
2 RR-TB
26 HR-TB
9 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
21 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 43 |
| lineage6.1.1 | 2 |
| lineage4.2.1 | 1 |
| lineage3 | 5 |
| lineage2.2.1 | 5 |
| La1.7;lineage4.9;lineage7 | 1 |
| lineage4.9;lineage7 | 3 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.5 | 1 |
| 2 | |
| lineage4.1;lineage4.9 | 1 |
| lineage3.1.2.2 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage3.1.2.1 | 1 |
| lineage1.1.1;lineage4 | 1 |
| La1.7;lineage4.9 | 3 |
| lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.1.1.3;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.1.2.1 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.9;lineage9 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 86 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR400326 | Other | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR6046245 | Other | lineage4.9 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR17832802 | HR-TB | lineage3 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR176740 | Other | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR6046485 | Other | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR29096410 | Other | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | ERR3797080 | Sensitive | lineage4.9 | None | ERR4798823 | HR-TB | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR2514552 | Sensitive | lineage3 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR3283032 | Other | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR26399265 | Other | lineage2.2.1 | None | ERR4812155 | Other | lineage4.9 | None | ERR3797086 | Sensitive | lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR987722 | MDR-TB | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR29050859 | Other | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | SRR11662694 | Other | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR4798504 | RR-TB | lineage3 | None |
|---|
