Rv3596c - c.103_105delTTAinsCTG
Drug resistance types
34 Sensitive
3 RR-TB
53 HR-TB
5 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
48 Other
lineage Counts
| lineage | Count |
|---|---|
| 18 | |
| lineage4.2;lineage4.9 | 2 |
| lineage4.9 | 36 |
| lineage4.1;lineage4.9 | 2 |
| lineage4.9;lineage6.3 | 7 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| lineage4.4.1.1 | 1 |
| lineage6.1.1 | 2 |
| lineage3 | 4 |
| lineage4.1.1.1 | 2 |
| lineage4.1.2.1 | 2 |
| lineage2.2.2;lineage4 | 1 |
| lineage4.8 | 1 |
| lineage4.1.3 | 2 |
| La3;lineage4.9 | 2 |
| lineage2.2.1 | 9 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.1.1;lineage4.9 | 1 |
| La1.7.1 | 1 |
| lineage2.1;lineage4.9 | 3 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage2.2 | 2 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9 | 3 |
| lineage1;lineage4.9 | 1 |
| lineage4.5 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.3.3 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 3 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4 | 1 |
| lineage4 | 2 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage6.3.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage2.1 | 1 |
| lineage2.2.1.2 | 1 |
| lineage2.1;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| La1;lineage4.9 | 1 |
| lineage4.1.1.3;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 144 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4407463 | HR-TB | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR4798823 | HR-TB | None | SRR12708384 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR5341330 | Other | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | ERR4811075 | Other | None | ERR4811142 | RR-TB | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | SRR6046245 | Other | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR4188350 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR7240492 | HR-TB | La1.7.1 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR7496509 | Other | None | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR12708416 | Sensitive | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR9786843 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR9786604 | Other | None | ERR5311098 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR18213713 | HR-TB | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR3675506 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR212123 | Other | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4810741 | HR-TB | None | ERR4811311 | Other | None | SRR28119753 | Other | lineage4.9 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR3675236 | Other | None | ERR8976043 | HR-TB | lineage2.2 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR17832802 | HR-TB | lineage3 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4819546 | HR-TB | lineage3 | None | ERR9117709 | Other | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR1640750 | Other | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675322 | HR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4811105 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR6358991 | HR-TB | None | ERR161037 | Other | lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | SRR6044876 | Sensitive | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | ERR867542 | HR-TB | lineage4.3 | None | SRR3675464 | HR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR9786671 | Other | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None |
|---|
