Rv0682 - c.165G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
20 Sensitive
4 RR-TB
44 HR-TB
7 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
43 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 56 |
| La1;lineage4.9 | 2 |
| La1.7;lineage4.9 | 6 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.3.4 | 2 |
| 1 | |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage4 | 1 |
| lineage4.9;lineage7 | 5 |
| lineage2.2.1 | 9 |
| lineage2.1;lineage4.9 | 2 |
| lineage1;lineage4.9 | 1 |
| M.canetti;lineage1 | 1 |
| lineage6.1.3 | 1 |
| La1.7.1 | 1 |
| La3;lineage4.9 | 6 |
| lineage3 | 2 |
| lineage1.1.3.1 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage1.1.2 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage4.1.2.1 | 2 |
| lineage2.2.1.2 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.1.2 | 1 |
| lineage2.2 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.9 | 2 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage4.8 | 1 |
| lineage4.1.1.2 | 1 |
| La1.7.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 121 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR181824 | HR-TB | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR387051 | Other | lineage4.9 | None | ERR4798823 | HR-TB | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR6045053 | Other | lineage4 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285068 | Sensitive | lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4769450 | Other | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR20970016 | Other | lineage2.2.1 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR3797047 | MDR-TB | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6046046 | Other | lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | SRR29050859 | Other | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR161037 | Other | lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR3675280 | RR-TB | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR473332 | Other | lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR6359082 | Other | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR212033 | Other | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR6046878 | Other | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR5341293 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR181887 | Other | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR2660539 | Other | lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | ERR176751 | Other | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None |
|---|
