lineage | Count |
---|---|
96 | |
La2 | 1 |
lineage4.9 | 26 |
lineage2.2.1 | 10 |
lineage4 | 17 |
La1.8.1 | 9 |
La1 | 1 |
lineage4.9;La1.8 | 1 |
lineage4.1.2.1 | 4 |
lineage3 | 4 |
lineage2 | 3 |
lineage1.2.2.2 | 1 |
lineage4.5 | 2 |
lineage4.6.1.1 | 1 |
lineage4.3.2 | 1 |
lineage1.1.2 | 2 |
lineage2.2 | 3 |
lineage3.1 | 2 |
lineage4.3.3 | 2 |
lineage4.3.4.1 | 1 |
lineage4.8 | 5 |
lineage9;lineage3.1 | 1 |
lineage4.9;La3 | 1 |
lineage4.2;La1.7 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage3;lineage2.2.1 | 1 |
lineage4.1.1 | 1 |
lineage4.3 | 1 |
lineage4.8;La3 | 1 |
lineage4.2.2.2 | 1 |
lineage4.1.2 | 1 |
lineage4.6.1 | 1 |
lineage4.1.1.3 | 1 |
spoligotype | Count |
---|---|
None | 204 |
ID | Drug resistance | Lineage | Country iso2 | ERR502943 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | SRR7585435 | Other | lineage4.9 | None | ERR5162122 | HR-TB | lineage4.9 | None | SRR8217918 | HR-TB | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR067712 | HR-TB | lineage4 | None | ERR323043 | HR-TB | None | ERR3283024 | Other | None | ERR1034634 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3468530 | Other | La1.8.1 | None | ERR3468430 | Other | La1.8.1 | None | ERR3283036 | HR-TB | None | ERR3468551 | HR-TB | La1.8.1 | None | ERR3468550 | HR-TB | La1.8.1 | None | ERR3797036 | HR-TB | None | ERR3468577 | HR-TB | La1 | None | ERR3468601 | HR-TB | La1.8.1 | None | ERR3468561 | HR-TB | lineage4.9 | None | ERR3468619 | HR-TB | lineage4.9;La1.8 | None | ERR3468651 | Other | La1.8.1 | None | ERR3797043 | HR-TB | None | ERR3797069 | Other | None | ERR3797044 | Other | None | ERR4188189 | Other | La1.8.1 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR4187652 | Other | lineage4.9 | None | ERR3797079 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR4407463 | HR-TB | None | ERR4188247 | HR-TB | None | ERR4596902 | HR-TB | lineage3 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4796577 | MDR-TB | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4810741 | HR-TB | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4800341 | Other | lineage3 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811030 | Sensitive | None | ERR4812155 | Sensitive | None | ERR4811142 | MDR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR5336148 | Other | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR736848 | HR-TB | None | ERR6358951 | HR-TB | lineage4 | None | ERR6359045 | HR-TB | None | ERR736835 | HR-TB | None | ERR736839 | Other | None | ERR702404 | HR-TB | None | ERR702406 | HR-TB | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9117709 | HR-TB | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR1172728 | MDR-TB | None | SRR11462861 | Other | La1.8.1 | None | SRR1169194 | Other | None | SRR1169306 | Other | None | SRR1173400 | Other | None | SRR1172857 | MDR-TB | None | SRR1172951 | Other | None | SRR1173363 | HR-TB | None | SRR1172817 | HR-TB | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173384 | Other | lineage4 | None | SRR1173484 | Other | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1184294 | HR-TB | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1175074 | MDR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184388 | Other | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184380 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR1196546 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196494 | MDR-TB | None | SRR12142341 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196768 | MDR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR12416824 | HR-TB | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13837502 | Sensitive | lineage4.9 | None | SRR15368973 | Other | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR19304036 | HR-TB | None | SRR19303884 | HR-TB | None | SRR19303813 | HR-TB | lineage4.8 | None | ERR11081257 | Other | lineage4.8 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR25827682 | Other | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2 | None | SRR3675455 | Sensitive | lineage4 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR3675465 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR4815604 | HR-TB | None | SRR3675387 | Sensitive | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675236 | HR-TB | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675279 | Other | None | SRR3675311 | Other | None | ERR181744 | HR-TB | None | SRR3675221 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR176751 | HR-TB | None | SRR3675456 | HR-TB | None | SRR3675555 | HR-TB | None | ERR4816999 | Other | None | ERR212001 | HR-TB | None | ERR2027263 | Other | lineage4 | None | ERR4816151 | Other | lineage4.8 | None | ERR4816585 | Other | lineage2.2 | None | SRR3675572 | Other | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR4817060 | RR-TB | None | ERR212123 | Other | None | SRR3675574 | HR-TB | None | ERR216965 | HR-TB | lineage4.9 | None | SRR3742665 | HR-TB | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4815815 | Sensitive | lineage4 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4818536 | Other | lineage4.9 | None | ERR234659 | HR-TB | None | ERR4818394 | Other | lineage4.9 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR4818021 | Other | La1.8.1 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4819546 | HR-TB | lineage3 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819462 | Other | lineage4 | None | ERR4818561 | HR-TB | lineage4 | None | ERR4818615 | Other | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR2514692 | Other | None | SRR5341302 | HR-TB | None | ERR1023509 | Other | None | ERR2693231 | Other | None | SRR5341333 | HR-TB | None | ERR2517475 | Other | lineage4 | None | SRR6045526 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046305 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046540 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | ERR3078008 | MDR-TB | lineage4.6.1 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046644 | HR-TB | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6789626 | Other | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None |
---|