TB-Profiler result

Run: ERR3468577
Summary

Run ID: ERR3468577

Sample name:

Date: 2024-10-03T19:55:58.866164

Number of reads: 144789

Percentage reads mapped: 14.93

Median coverage: 4.0

Strain:

Spoligotype:

Drug-resistance: Sensitive

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Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family RDs Frequency
La1.8.1 M.bovis None 0.29
Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations WHO confidence Comment
rifampicin
isoniazid
ethambutol
pyrazinamide
streptomycin
fluoroquinolones
moxifloxacin
ofloxacin
levofloxacin
ciprofloxacin
aminoglycosides
amikacin
capreomycin
kanamycin
cycloserine
ethionamide
clofazimine
para-aminosalicylic_acid
delamanid
bedaquiline
linezolid
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs Confidence Comment
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs Confidence
katG 2155716 c.396T>G synonymous_variant 0.54 isoniazid
katG 2155728 c.384G>C synonymous_variant 0.54 isoniazid
katG 2155735 p.Met126Gln missense_variant 0.54 isoniazid
katG 2155737 c.375C>A synonymous_variant 0.54 isoniazid
katG 2155743 c.369G>C synonymous_variant 0.54 isoniazid