Rv2477c - c.648T>G
Drug resistance types
16 Sensitive
8 RR-TB
96 HR-TB
13 MDR-TB
2 Pre-XDR-TB
2 XDR-TB
146 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 109 |
| lineage1.1.1 | 1 |
| lineage2.1;lineage4.9 | 13 |
| lineage2.2.1 | 11 |
| lineage4.6.2.2 | 4 |
| lineage4.1;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.1.2.1 | 12 |
| lineage4.8;lineage4.9 | 2 |
| M.canetti;lineage4.9 | 3 |
| lineage1.1.3.1 | 1 |
| 16 | |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 4 |
| lineage2.1;lineage6.3 | 2 |
| La3;lineage4.8 | 1 |
| La3;lineage2.1;lineage4.9 | 3 |
| lineage6.3.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 9 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La2;lineage2.2 | 1 |
| La3;lineage4.9 | 5 |
| lineage4.7 | 1 |
| La3;lineage1.1.2 | 1 |
| lineage4.8 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage1.1.2 | 2 |
| lineage4 | 5 |
| La1.2;La1.8.1 | 1 |
| lineage1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.1.1.1 | 2 |
| lineage4.3.2 | 1 |
| La3;lineage2 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La3 | 2 |
| lineage6.1.3 | 2 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage4.6.1.1 | 3 |
| La1.2.BCG | 1 |
| lineage3 | 2 |
| lineage2.2 | 2 |
| lineage4.3.4.2.1 | 2 |
| lineage2.2.1.1 | 1 |
| lineage2.1 | 3 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La1.6;La3;lineage4.9 | 2 |
| lineage4.1.3 | 2 |
| La1.7;lineage4.9 | 2 |
| La1.7.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage4.1.2 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage4.4.1.1 | 1 |
| lineage3.1 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage1.2.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 283 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | SRR14066533 | RR-TB | lineage1.1.1 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | ERR9786711 | Other | lineage4.6.2.2 | None | ERR4798431 | Other | lineage4.1;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR6865513 | Other | lineage4.1.2.1 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR736834 | HR-TB | lineage4.9 | None | ERR6866022 | HR-TB | lineage4.8;lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | SRR6045503 | Other | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR181824 | MDR-TB | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR1184381 | MDR-TB | None | ERR1063896 | HR-TB | None | ERR9786604 | Other | None | SRR6789626 | Other | None | SRR25827682 | Other | None | SRR3675236 | Other | None | ERR349300 | Other | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR4817893 | Other | La3;lineage4.8 | None | ERR4024991 | HR-TB | lineage4.8;lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR4798099 | HR-TB | lineage4.9 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR212033 | Other | lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR6866639 | HR-TB | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | ERR4178309 | Other | lineage4.1.2.1 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR369163 | Other | lineage4.9 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341333 | HR-TB | lineage2.1;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR3797014 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | ERR6865502 | Sensitive | lineage4 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR5341308 | HR-TB | lineage4.9 | None | SRR23961558 | RR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6511621 | HR-TB | lineage4.9 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675235 | HR-TB | lineage4.9 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR3797070 | Other | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR363453 | Other | lineage4.9 | None | SRR3675457 | Other | lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR20969677 | HR-TB | La3;lineage2 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR373947 | Other | lineage4.9 | None | SRR5341467 | Other | lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR1172817 | Other | La3 | None | ERR9787165 | Other | lineage6.1.3 | None | ERR502510 | HR-TB | lineage4.9 | None | ERR363500 | Other | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR349266 | Other | lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR736856 | HR-TB | lineage4.9 | None | ERR502511 | HR-TB | lineage4.9 | None | SRR7496509 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR11252664 | Other | lineage2.2.1 | None | ERR9786843 | Other | None | ERR11252736 | Other | lineage4.9 | None | SRR7535086 | Other | None | SRR18213713 | HR-TB | None | ERR212001 | HR-TB | None | ERR4407463 | HR-TB | None | ERR4816999 | Other | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR369162 | Other | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR4797474 | Other | lineage4.9 | None | ERR4797264 | HR-TB | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR779852 | HR-TB | lineage4.9 | None | ERR4800341 | HR-TB | lineage3 | None | ERR4810624 | MDR-TB | lineage2.2 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR5341330 | Other | lineage4.9 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | SRR13423649 | Other | lineage2.2.1 | None | ERR363421 | Other | lineage4.9 | None | ERR702405 | HR-TB | lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR1159378 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | ERR3797069 | Other | lineage4.9 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR702406 | Other | lineage2.1 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR3283024 | HR-TB | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR9119669 | MDR-TB | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR373946 | Other | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR502912 | Other | lineage2.2.1 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR124636 | HR-TB | lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | ERR3283032 | Other | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR349264 | Other | lineage4.9 | None | SRR3675585 | HR-TB | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | SRR14801759 | MDR-TB | La1.7;lineage4.9 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR363502 | Other | lineage4.9 | None | SRR19295647 | HR-TB | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR3675246 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR2693257 | HR-TB | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4797184 | HR-TB | lineage4.9 | None | SRR1158918 | Other | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR369159 | Other | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR9786671 | Other | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR234659 | HR-TB | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR6358979 | HR-TB | lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR363449 | Other | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | ERR2693252 | HR-TB | lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR6866410 | HR-TB | lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | ERR3283044 | Other | lineage4 | None | ERR2693231 | HR-TB | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR990545 | RR-TB | lineage3 | None | SRR6045555 | Other | lineage4.9 | None | SRR6046644 | MDR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR26399239 | Sensitive | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | SRR6045526 | Other | lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR3675234 | HR-TB | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR349265 | Other | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR26159043 | Other | lineage4.9 | None | ERR323066 | HR-TB | lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR11489020 | MDR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1173400 | Other | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR1035122 | HR-TB | lineage4.9 | None | ERR323062 | HR-TB | lineage4.9 | None | ERR363498 | Other | lineage4.9 | None | ERR3445502 | HR-TB | lineage4.9;lineage7 | None | SRR6045706 | Other | lineage4.9 | None | SRR12006550 | Other | lineage1.2.1.2 | None | ERR4796254 | Other | lineage4.9 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR1165699 | Other | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR3801503 | Other | lineage4.6.2.2 | None | SRR1172728 | RR-TB | La3 | None | ERR363490 | Other | lineage4.9 | None | ERR3283042 | HR-TB | lineage4.9 | None |
|---|
