Rv0682 - c.39G>C
Drug resistance types
79 Sensitive
4 RR-TB
69 HR-TB
14 MDR-TB
2 Pre-XDR-TB
2 XDR-TB
66 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 128 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4.8;lineage4.9 | 2 |
| M.canetti;lineage2.2 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| La1.8.1 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;lineage4 | 1 |
| 5 | |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4 | 5 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage9 | 2 |
| La3;lineage4.9 | 12 |
| lineage4.3.4.2.1 | 2 |
| lineage4.4.1.2 | 1 |
| lineage4.3.4 | 1 |
| lineage4.6.2.2 | 3 |
| La1;lineage4.9 | 2 |
| lineage5.2 | 2 |
| lineage3 | 2 |
| lineage3.1.2.1 | 1 |
| lineage2.2.1 | 9 |
| lineage2.2.1.2 | 2 |
| lineage1.1.3.1 | 1 |
| lineage4.1.2 | 2 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage2.2.1.1 | 2 |
| La1.7;lineage4.9 | 3 |
| lineage4.9;lineage7 | 3 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage4.2;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage2.1;lineage4.9 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.8.1 | 1 |
| lineage4.3.4.1 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.4.1.1.1 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.8 | 2 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 236 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29097026 | Other | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341298 | Sensitive | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR7236177 | Other | La1.8.1 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR1063896 | Sensitive | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR369151 | Other | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR5535933 | Other | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6045053 | Other | lineage4 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR4769450 | Other | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR161037 | Other | lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR9786525 | Other | lineage4 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR990545 | Other | lineage3 | None | ERR3273109 | HR-TB | lineage4 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | ERR108471 | HR-TB | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR5341453 | Other | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR4816656 | Other | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR9786843 | Other | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR7535082 | Sensitive | lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR137286 | Other | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | ERR176751 | Other | lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR987722 | MDR-TB | None | ERR212001 | HR-TB | None | ERR234659 | Other | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR9970979 | Sensitive | lineage4.8 | None |
|---|
