Rv0005 - p.Thr500Asn
Drug resistance types
0 Sensitive
0 RR-TB
14 HR-TB
0 MDR-TB
121 Pre-XDR-TB
6 XDR-TB
27 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 22 |
| lineage4.5 | 2 |
| lineage4.2.2.2 | 1 |
| La1;lineage4.9 | 1 |
| lineage2.2.2 | 20 |
| lineage4.1.1.3 | 10 |
| lineage4.3.3 | 17 |
| lineage2.2.1 | 45 |
| lineage4.1.2.1 | 5 |
| lineage4.8 | 7 |
| lineage3 | 6 |
| lineage1.1.2 | 2 |
| lineage2.2.1.2;lineage7 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3 | 1 |
| lineage4.1.2.1;lineage4.2.1 | 2 |
| lineage4.9;lineage7 | 1 |
| lineage4 | 1 |
| lineage1.2.2.2 | 2 |
| lineage4.3.4.2 | 4 |
| 1 | |
| lineage4.4.1.1.1 | 1 |
| lineage4.2.2 | 2 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage1.2.2.2;lineage3 | 1 |
| lineage3.1.2.1;lineage4 | 1 |
| lineage3.1.3 | 1 |
| lineage2.2.1.1 | 3 |
| lineage2.2 | 2 |
| lineage4.3.2 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.1.1.1 | 2 |
| lineage3.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 168 |
Geographic prevalence
Country level data for this variant is available for 34 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR14520076 | Other | lineage4.5 | None | SRR28044944 | XDR-TB | lineage4.2.2.2 | None | ERR4769497 | Other | La1;lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR4769493 | Other | lineage4.9 | None | SRR10315595 | Pre-XDR-TB | lineage2.2.2 | None | SRR9971327 | Pre-XDR-TB | lineage2.2.2 | None | SRR1144771 | Pre-XDR-TB | lineage2.2.2 | None | ERR1873392 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4798106 | Pre-XDR-TB | lineage4.3.3 | in | ERR11068063 | Pre-XDR-TB | lineage2.2.1 | None | ERR9993137 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR1169040 | Pre-XDR-TB | lineage4.3.3 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR10380173 | Pre-XDR-TB | lineage4.3.3 | None | SRR16156780 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR16088557 | Pre-XDR-TB | lineage2.2.1 | None | SRR7069162 | Pre-XDR-TB | lineage2.2.1 | None | ERR4818536 | Other | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | SRR27107274 | Pre-XDR-TB | lineage4.8 | None | SRR6458427 | Pre-XDR-TB | lineage4.3.3 | None | ERR1063855 | Other | lineage4.9 | None | SRR26056433 | HR-TB | lineage3 | None | SRR1048862 | Pre-XDR-TB | lineage2.2.2 | None | SRR6045347 | Other | lineage4.9 | None | SRR10500314 | Pre-XDR-TB | lineage1.1.2 | None | DRR130189 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR12420742 | Pre-XDR-TB | lineage2.2.1 | None | SRR1172393 | Pre-XDR-TB | lineage4.3.3 | None | ERR4831481 | Pre-XDR-TB | lineage1.1.2 | None | ERR4798136 | Pre-XDR-TB | lineage2.2.1 | in | SRR7069180 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799582 | Pre-XDR-TB | lineage2.2.1 | in | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | SRR26937066 | Pre-XDR-TB | lineage2.2.1 | None | ERR775299 | Pre-XDR-TB | lineage4.3.3 | pe | SRR3105791 | Pre-XDR-TB | lineage3 | None | SRR25827357 | XDR-TB | lineage1.1.2;lineage2.2.1;lineage3 | None | SRR16156779 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1003106 | Pre-XDR-TB | lineage2.2.2 | None | SRR16156791 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8665956 | Pre-XDR-TB | lineage2.2.1 | None | SRR6356993 | Pre-XDR-TB | lineage4.1.2.1;lineage4.2.1 | None | SRR13423559 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR1873531 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR6458440 | Pre-XDR-TB | lineage4.3.3 | None | ERR459445 | Pre-XDR-TB | lineage4.8 | None | ERR688035 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR6359082 | Other | lineage4.9 | None | ERR4799908 | Pre-XDR-TB | lineage3 | in | ERR4797453 | Pre-XDR-TB | lineage2.2.1 | in | SRR1048845 | Pre-XDR-TB | lineage2.2.2 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR1048844 | Pre-XDR-TB | lineage2.2.2 | None | SRR28351204 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR28888045 | Pre-XDR-TB | lineage4.3.3 | None | SRR28393326 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR22461697 | Pre-XDR-TB | lineage4.3.3 | None | SRR28351172 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553429 | HR-TB | None | SRR1048010 | Pre-XDR-TB | lineage2.2.2 | None | SRR13423557 | Pre-XDR-TB | lineage2.2.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR6046046 | Other | lineage4.9 | None | SRR1013561 | Pre-XDR-TB | lineage2.2.2 | None | SRR6046492 | Other | lineage4.9 | None | SRR833217 | Pre-XDR-TB | lineage4.2.2 | None | ERR8665606 | Pre-XDR-TB | lineage2.2.1 | None | SRR6964525 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175251 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045832 | Other | lineage4.9 | None | SRR22873607 | XDR-TB | lineage2.2.1 | None | SRR18714843 | Pre-XDR-TB | lineage4.3.3 | None | SRR6356970 | Pre-XDR-TB | lineage4.1.2.1;lineage4.2.1 | None | ERR3148175 | Pre-XDR-TB | lineage4.1.1.3 | mx | SRR1013545 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360626 | Pre-XDR-TB | lineage2.2.2 | kr | SRR4423147 | Pre-XDR-TB | lineage3 | None | SRR2024955 | Pre-XDR-TB | lineage2.2.1 | cn | SRR24256367 | Pre-XDR-TB | lineage2.2.1 | None | SRR15722980 | Other | lineage2.2.1 | None | ERR4813156 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR8665634 | Pre-XDR-TB | lineage2.2.1 | None | ERR459446 | Pre-XDR-TB | lineage4.8 | None | ERR459444 | Pre-XDR-TB | lineage4.8 | None | SRR11567794 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013546 | Pre-XDR-TB | lineage2.2.2 | None | ERR11081998 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR23340154 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156800 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4011066 | Pre-XDR-TB | lineage2.2.1 | None | SRR16588747 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256149 | Pre-XDR-TB | lineage4.3.3 | None | ERR4769450 | Other | lineage4.9 | None | ERR4796781 | Pre-XDR-TB | lineage2.2.1 | in | ERR8665957 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02419678 | Pre-XDR-TB | lineage4.3.3 | by | ERR4798336 | Pre-XDR-TB | lineage1.2.2.2;lineage3 | in | SRR1163399 | Pre-XDR-TB | lineage4.3.3 | None | ERR9993138 | Pre-XDR-TB | lineage4.1.2.1 | None | SAMN02360560 | Pre-XDR-TB | lineage2.2.2 | kr | SRR1011519 | Pre-XDR-TB | lineage4.2.2 | None | SRR28351455 | Other | lineage3.1.2.1;lineage4 | None | ERR1034603 | Pre-XDR-TB | lineage4.1.1.3 | pk | ERR2510606 | Pre-XDR-TB | lineage3 | pk | ERR3335755 | Pre-XDR-TB | lineage3.1.3 | pk | ERR4813845 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4799155 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR752229 | Other | lineage4.5 | None | ERR3148197 | Pre-XDR-TB | lineage4.1.1.3 | mx | SRR23310939 | HR-TB | lineage4.3.3 | None | SRR25827540 | XDR-TB | lineage2.2.1 | None | ERR4799102 | Pre-XDR-TB | lineage3 | in | ERR3287580 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR18593215 | Pre-XDR-TB | lineage4.8 | None | ERR1035271 | Pre-XDR-TB | lineage4.3.4.2 | br | ERR3283055 | HR-TB | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR6046141 | Other | lineage4.9 | None | ERR11044488 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR2024961 | Pre-XDR-TB | lineage2.2.1 | cn | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR1003104 | Pre-XDR-TB | lineage2.2.2 | None | ERR7911226 | Pre-XDR-TB | lineage2.2.1 | md | ERR4799025 | Other | lineage4.8 | None | ERR4813826 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR7517805 | Pre-XDR-TB | lineage2.2.1 | None | ERR4812737 | Other | lineage4.3.2 | pe | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR4813132 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR4423144 | Pre-XDR-TB | lineage4.1.1.1 | None | SRR1163204 | Pre-XDR-TB | lineage4.3.3 | None | ERR4796484 | Pre-XDR-TB | lineage1.2.2.2 | in | SRR21277679 | Other | lineage2.2.1.1 | None | ERR8665822 | Pre-XDR-TB | lineage2.2.1 | None | ERR2446566 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800344 | Pre-XDR-TB | lineage3.1.2 | in | SRR6280174 | Pre-XDR-TB | lineage2.2.1 | cn | ERR7911618 | Pre-XDR-TB | lineage2.2.1 | za | SRR10315593 | Pre-XDR-TB | lineage2.2.2 | None | SRR25207180 | XDR-TB | lineage2.2.2 | None | SAMN02360552 | Pre-XDR-TB | lineage2.2.2 | kr | ERR5917670 | Pre-XDR-TB | lineage4.3.3 | by | ERR8665633 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553683 | Pre-XDR-TB | lineage4.1.1.1 | None | SRR1048861 | Pre-XDR-TB | lineage2.2.2 | None | ERR4769452 | Other | lineage4.9 | None | SRR5067601 | Other | lineage2.2.1 | vn | SRR13232675 | Pre-XDR-TB | lineage4.3.3 | None | ERR459447 | Pre-XDR-TB | lineage4.8 | None | SRR24710145 | XDR-TB | lineage2.2.1 | None | SRR10315594 | Pre-XDR-TB | lineage2.2.2 | None | ERR4827599 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013562 | Pre-XDR-TB | lineage2.2.2 | None | SRR2024966 | Pre-XDR-TB | lineage2.2.1 | cn | ERR5917716 | Pre-XDR-TB | lineage2.2.1 | by |
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