Rv0006 - c.520C>T

Drug resistance types
6 Sensitive 2 RR-TB 8 HR-TB 6 MDR-TB 0 Pre-XDR-TB 0 XDR-TB 497 Other
lineage Counts
lineage Count
M.canetti;lineage4.9 3
La1.2 485
lineage4.2;lineage4.6.3;lineage4.9 1
La1.2;La1.8.2 1
lineage2.2 1
lineage4.9 14
La1.7;M.canetti;lineage4.9 2
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
lineage4.2;lineage4.6.3;lineage4.9.1 2
La2;lineage2.2 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
La1.7.1 1
La2;lineage4.9 1
lineage4.9.1 1
lineage3 1
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
spoligotype Counts
spoligotype Count
None 519
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR6045233 Other M.canetti;lineage4.9 None
ERR6210128 Other La1.2 None
ERR6210266 Other La1.2 None
ERR6210195 Other La1.2 None
ERR6201879 Other La1.2 None
ERR4769513 Other La1.2 None
ERR6201845 Other La1.2 None
ERR6201844 Other La1.2 None
ERR6198447 Other La1.2 None
ERR6201998 Other La1.2 None
ERR6201960 Other La1.2 None
ERR6209278 Other La1.2 None
ERR6202004 Other La1.2 None
ERR6209347 Other La1.2 None
ERR6209542 Other La1.2 None
ERR2516252 MDR-TB La1.2 be
ERR2515036 Other La1.2 gb
ERR2516189 Other La1.2 be
ERR4769438 Other La1.2 None
ERR4769418 Other La1.2 None
ERR4769490 Other La1.2 None
ERR4772212 Other La1.2 None
ERR4772200 Other La1.2 None
ERR6198117 Other La1.2 None
ERR6201795 Other La1.2 None
ERR6201819 Other La1.2 None
ERR6336657 Other La1.2 None
ERR6338293 Other La1.2 None
SRR15296974 Other La1.2 None
SRR5486088 Other La1.2 None
SRR7070201 Other La1.2 None
ERR5311097 Sensitive lineage4.2;lineage4.6.3;lineage4.9 None
ERR2815598 Other La1.2 None
SRR13180270 Other La1.2 None
ERR6149472 Other La1.2;La1.8.2 None
ERR6201804 Other La1.2 None
ERR6201822 Other La1.2 None
ERR6201873 Other La1.2 None
ERR6209352 Other La1.2 None
ERR6210129 Other La1.2 None
ERR6210268 Other La1.2 None
ERR6336619 Other La1.2 None
ERR6336809 Other La1.2 None
ERR6337203 Other La1.2 None
ERR6337393 Other La1.2 None
ERR6338351 Other La1.2 None
ERR6338354 Other La1.2 None
ERR6338364 Other La1.2 None
SRR7851344 Other La1.2 None
ERR4817577 Other La1.2 gb
ERR6337341 Other La1.2 None
ERR6209526 Other La1.2 None
SRR25167912 Other La1.2 None
SRR21689590 Other La1.2 None
SRR15296969 Other La1.2 None
ERR4810624 MDR-TB lineage2.2 None
ERR6198365 Other La1.2 None
ERR6337342 Other La1.2 None
ERR6198379 Other La1.2 None
ERR6338272 Other La1.2 None
ERR6338278 Other La1.2 None
ERR6338302 Other La1.2 None
ERR6202040 Other La1.2 None
ERR6210201 Other La1.2 None
ERR6338362 Other La1.2 None
SRR7851350 Other La1.2 None
SRR13986564 Other La1.2 None
SRR16058435 Other La1.2 None
ERR6336617 Other La1.2 None
ERR6198443 Other La1.2 None
SRR15296954 Other La1.2 None
ERR6337399 Other La1.2 None
SRR7851302 Other La1.2 None
SRR7851330 Other La1.2 None
ERR6201806 Other La1.2 None
ERR6201836 Other La1.2 None
ERR6203392 Other La1.2 None
ERR6210272 Other La1.2 None
ERR6338271 Other La1.2 None
SRR5486091 Other La1.2 None
SRR6485027 Other La1.2 None
ERR4188247 HR-TB lineage4.9 None
ERR6201832 Other La1.2 None
SRR5486073 Other La1.2 None
ERR4769455 Other La1.2 None
ERR6337401 Other La1.2 None
ERR6337067 Other La1.2 None
SRR5486081 Other La1.2 None
ERR6201801 Other La1.2 None
ERR6198389 Other La1.2 None
ERR2815591 Other La1.2 None
ERR4769427 Other La1.2 None
ERR6338284 Other La1.2 None
ERR6357083 Other La1.2 None
ERR6201907 Other La1.2 None
ERR6201796 Other La1.2 None
ERR6198390 Other La1.2 None
ERR6201835 Other La1.2 None
ERR6201908 Other La1.2 None
ERR6201906 Other La1.2 None
ERR6206178 Other La1.2 None
ERR6337345 Other La1.2 None
ERR6198445 Other La1.2 None
ERR11044651 Other La1.2 None
ERR6337205 Other La1.2 None
ERR6337381 Other La1.2 None
ERR6338275 Other La1.2 None
ERR6198391 Other La1.2 None
ERR6337378 Other La1.2 None
ERR9891994 Other La1.2 None
ERR6201814 Other La1.2 None
ERR3276206 Other La1.2 nl
SRR4199188 Other La1.2 None
ERR6208726 Other La1.2 None
ERR6209576 Other La1.2 None
ERR6337413 Other La1.2 None
ERR6201863 Other La1.2 None
ERR6337388 Other La1.2 None
ERR4772226 Other La1.2 None
ERR6338282 Other La1.2 None
SRR5486071 Other La1.2 None
ERR6338288 Other La1.2 None
ERR6201902 Other La1.2 None
ERR6210148 Other La1.2 None
ERR6209102 Other La1.2 None
SRR7851331 Other La1.2 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
ERR4769509 Other La1.2 None
ERR6201858 Other La1.2 None
ERR6338360 Other La1.2 None
ERR4772225 Other La1.2 None
ERR6201866 Other La1.2 None
SRR5486092 Other La1.2 None
ERR6209423 Other La1.2 None
SRR5486093 Other La1.2 None
SRR7851329 Other La1.2 None
ERR6338366 Other La1.2 None
ERR6337400 Other La1.2 None
ERR4772206 Other La1.2 None
ERR4772210 Other La1.2 None
SRR6045399 Other M.canetti;lineage4.9 None
ERR4769409 Other La1.2 None
ERR6201883 Other La1.2 None
ERR6338294 Other La1.2 None
ERR6338306 Other La1.2 None
ERR6338359 Other La1.2 None
ERR6201857 Other La1.2 None
ERR6210270 Other La1.2 None
SRR7851353 Other La1.2 None
ERR4769459 Other La1.2 None
ERR6337408 Other La1.2 None
ERR6336663 Other La1.2 None
ERR4769400 Other La1.2 None
ERR6337366 Other La1.2 None
ERR6336827 Other La1.2 None
ERR6337379 Other La1.2 None
ERR6210216 Other La1.2 None
ERR4772211 Other La1.2 None
ERR6337397 Other La1.2 None
ERR6338291 Other La1.2 None
SRR5486076 Other La1.2 None
SRR5486087 Other La1.2 None
SRR7851355 Other La1.2 None
ERR6336662 Other La1.2 None
ERR4769430 Other La1.2 None
ERR2815506 Other La1.2 None
ERR6338273 Other La1.2 None
ERR6338353 Other La1.2 None
ERR6337206 Other La1.2 None
SRR6046397 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR7851342 Other La1.2 None
SRR7851326 Other La1.2 None
ERR6336616 Other La1.2 None
ERR6337406 Other La1.2 None
ERR6198374 Other La1.2 None
ERR6198376 Other La1.2 None
ERR6201817 Other La1.2 None
ERR6201848 Other La1.2 None
ERR6337402 Other La1.2 None
ERR6338269 Other La1.2 None
ERR6337360 Other La1.2 None
ERR6338355 Other La1.2 None
SRR20551030 Other La1.2 None
ERR6198378 Other La1.2 None
ERR6201794 Other La1.2 None
ERR11068085 Other La1.2 None
ERR6198349 Other La1.2 None
ERR6201821 Other La1.2 None
ERR6201899 Other La1.2 None
ERR6210161 Other La1.2 None
ERR6210175 Other La1.2 None
ERR6337349 Other La1.2 None
ERR6338298 Other La1.2 None
ERR6338356 Other La1.2 None
ERR6338361 Other La1.2 None
ERR6201870 Other La1.2 None
ERR6338287 Other La1.2 None
ERR3797029 Other lineage4.9 None
ERR6337384 Other La1.2 None
ERR6209445 Other La1.2 None
SRR11418314 Other La1.2 None
ERR2026698 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR6336682 Other La1.2 None
ERR6338307 Other La1.2 None
ERR6201823 Other La1.2 None
ERR6337351 Other La1.2 None
ERR6337412 Other La1.2 None
ERR4769421 Other La1.2 None
ERR11044316 Other La1.2 None
ERR6201837 Other La1.2 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR6198216 Other La1.2 None
ERR6201812 Other La1.2 None
ERR6201875 Other La1.2 None
ERR6201877 Other La1.2 None
ERR6201881 Other La1.2 None
ERR6210127 Other La1.2 None
ERR6201887 Other La1.2 None
ERR6210267 Other La1.2 None
ERR6201869 Other La1.2 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR6337202 Other La1.2 None
ERR6338289 Other La1.2 None
ERR6337386 Other La1.2 None
SRR7851375 Other La1.2 None
ERR6210230 Other La1.2 None
ERR6198448 Other La1.2 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
SRR13986567 Other La1.2 None
SRR18289197 Other La1.2 None
ERR6202401 Other La1.2 None
SRR1792478 HR-TB La1.7.1 None
SRR5486089 Other La1.2 None
SRR7851369 Other La1.2 None
ERR6338274 Other La1.2 None
ERR6337068 Other La1.2 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR6201813 Other La1.2 None
ERR6338290 Other La1.2 None
ERR6201972 Other La1.2 None
ERR6336618 Other La1.2 None
ERR6201828 Other La1.2 None
SRR7851312 Other La1.2 None
ERR6336810 Other La1.2 None
ERR2026697 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR6198400 Other La1.2 None
ERR6337383 Other La1.2 None
ERR6338279 Other La1.2 None
ERR6201860 Other La1.2 None
SRR21691063 Other La1.2 None
ERR11044084 Other La1.2 None
ERR4769499 Other La1.2 None
ERR4772204 Other La1.2 None
ERR4772219 Other La1.2 None
ERR6337398 Other La1.2 None
ERR6336659 Other La1.2 None
ERR6338286 Other La1.2 None
ERR6201849 Other La1.2 None
ERR6209348 Other La1.2 None
SRR20551031 Other La1.2 None
ERR6199027 Other La1.2 None
ERR6201890 Other La1.2 None
ERR6210130 Other La1.2 None
ERR6336685 Other La1.2 None
ERR6337348 Other La1.2 None
ERR6201978 Other La1.2 None
ERR6210150 Other La1.2 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR6201842 Other La1.2 None
SRR5486072 Other La1.2 None
ERR4769521 RR-TB lineage4.9 None
ERR6198377 Other La1.2 None
ERR6201818 Other La1.2 None
ERR6201833 Other La1.2 None
ERR6209343 Other La1.2 None
ERR6336661 Other La1.2 None
ERR6336828 Other La1.2 None
ERR6337377 Other La1.2 None
ERR4769503 Other La1.2 None
ERR9125636 Other La1.2 None
ERR6210271 Other La1.2 None
ERR6209443 Other La1.2 None
ERR6338276 Other La1.2 None
ERR6201945 Other La1.2 None
ERR6201797 Other La1.2 None
ERR6201898 Other La1.2 None
SRR11418337 Other La1.2 None
ERR6338292 Other La1.2 None
ERR6209301 Other La1.2 None
ERR6337411 Other La1.2 None
ERR6209044 Other La1.2 None
ERR6209493 Other La1.2 None
ERR6338283 Other La1.2 None
ERR6338285 Other La1.2 None
ERR6337346 Other La1.2 None
ERR6337069 Other La1.2 None
ERR6201871 Other La1.2 None
ERR6198394 Other La1.2 None
ERR6198399 Other La1.2 None
ERR6201800 Other La1.2 None
ERR6209524 Other La1.2 None
ERR6201886 Other La1.2 None
ERR6210169 Other La1.2 None
ERR6337339 Other La1.2 None
ERR6338281 Other La1.2 None
ERR6338301 Other La1.2 None
SRR13986559 Other La1.2 None
ERR6201901 Other La1.2 None
ERR6210147 Other La1.2 None
SRR6044942 HR-TB lineage4.9 None
ERR6201830 Other La1.2 None
ERR6201840 Other La1.2 None
ERR4772230 Other La1.2 None
ERR6201862 Other La1.2 None
ERR6337391 Other La1.2 None
ERR6201850 Other La1.2 None
ERR6201882 Other La1.2 None
ERR6209527 Other La1.2 None
ERR6337414 Other La1.2 None
SRR21689968 Other La1.2 None
SRR3085259 Other La1.2 None
ERR6337343 Other La1.2 None
ERR6209346 Other La1.2 None
ERR2815573 Other La1.2 None
ERR6338277 Other La1.2 None
ERR6338304 Other La1.2 None
ERR6337364 Other La1.2 None
ERR6337390 Other La1.2 None
ERR6338367 Other La1.2 None
SRR13986562 Other La1.2 None
ERR6198395 Other La1.2 None
ERR6198209 Other La1.2 None
SRR11418336 Other La1.2 None
ERR6337395 Other La1.2 None
ERR6337409 Other La1.2 None
ERR6210223 Other La1.2 None
ERR6336658 Other La1.2 None
ERR6201825 Other La1.2 None
ERR6338357 Other La1.2 None
ERR6201826 Other La1.2 None
ERR6201903 Other La1.2 None
ERR6210236 Other La1.2 None
ERR6198317 Other La1.2 None
ERR6201838 Other La1.2 None
SRR25167911 Other La1.2 None
ERR4769501 Other La1.2 None
ERR4769448 Other La1.2 None
ERR6204677 Other La1.2 None
ERR2815525 Other La1.2 None
ERR6198204 Other La1.2 None
ERR6198444 Other La1.2 None
ERR6201811 Other La1.2 None
ERR6337352 Other La1.2 None
ERR6337405 Other La1.2 None
ERR6337396 Other La1.2 None
ERR4772218 RR-TB La1.2 None
SRR5486090 Other La1.2 None
ERR6337344 Other La1.2 None
SRR7851352 Other La1.2 None
ERR2815594 Other La1.2 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR6337356 Other La1.2 None
SRR20551029 Other La1.2 None
ERR3825346 Other La1.2 None
ERR6198291 Other La1.2 None
ERR6198449 Other La1.2 None
ERR6201894 Other La1.2 None
ERR6201807 Other La1.2 None
ERR6210259 Other La1.2 None
ERR6337204 Other La1.2 None
ERR6337361 Other La1.2 None
ERR6337385 Other La1.2 None
ERR6337375 Other La1.2 None
ERR6198247 Other La1.2 None
SRR10808730 Other lineage4.9 None
SRR25167946 Other La1.2 None
ERR6201810 Other La1.2 None
ERR6201986 Other La1.2 None
ERR6209344 Other La1.2 None
ERR6209323 Other La1.2 None
ERR6210149 Other La1.2 None
ERR4769511 Other La1.2 None
ERR6201808 Other La1.2 None
ERR6201809 Other La1.2 None
ERR6201889 Other La1.2 None
ERR6201841 Other La1.2 None
ERR6201897 Other La1.2 None
SRR6044838 Other lineage4.9 None
SRR7069668 Other La1.2 None
ERR13285192 Sensitive lineage4.9 None
ERR6201831 Other La1.2 None
ERR6201843 Other La1.2 None
ERR6201847 Other La1.2 None
ERR6209335 Other La1.2 None
ERR6209444 Other La1.2 None
ERR6210252 Other La1.2 None
SRR15296965 Other La1.2 None
ERR6201878 Other La1.2 None
ERR6201895 Other La1.2 None
ERR6201896 Other La1.2 None
ERR6201937 Other La1.2 None
ERR6209424 Other La1.2 None
SRR15296964 Other La1.2 None
SRR7851322 Other La1.2 None
SRR26399239 Sensitive lineage4.9 None
ERR6336686 Other La1.2 None
SRR4117155 Other La1.2 None
ERR4772205 Other La1.2 None
ERR6201861 Other La1.2 None
ERR2815554 Other La1.2 None
ERR6201865 Other La1.2 None
ERR6336683 Other La1.2 None
ERR6208976 Other La1.2 None
ERR6198401 Other La1.2 None
ERR6337394 Other La1.2 None
ERR6210188 Other La1.2 None
ERR4769494 Other La1.2 None
ERR6209573 Other La1.2 None
ERR6201874 Other La1.2 None
ERR6201884 Other La1.2 None
ERR2815555 Other La1.2 None
ERR245758 Other lineage4.9.1 None
ERR6337357 Other La1.2 None
ERR6201853 Other La1.2 None
ERR6338295 Other La1.2 None
ERR736848 Other lineage4.9 None
ERR2815543 Other La1.2 None
ERR6337389 Other La1.2 None
ERR6209192 Other La1.2 None
ERR6201915 Other La1.2 None
ERR6198375 Other La1.2 None
ERR6201802 Other La1.2 None
ERR6337404 Other La1.2 None
ERR4829652 Other La1.2 None
ERR6209349 Other La1.2 None
ERR6209422 Other La1.2 None
ERR6201909 Other La1.2 None
ERR6210269 Other La1.2 None
ERR6201891 Other La1.2 None
ERR161037 Other lineage4.9 None
ERR6210158 Other La1.2 None
ERR6201885 Other La1.2 None
ERR2815599 Other La1.2 None
ERR6337353 Other La1.2 None
ERR4769492 Other La1.2 None
ERR1063846 HR-TB lineage4.9 None
ERR6201910 Other La1.2 None
ERR6198207 Other La1.2 None
ERR6209345 Other La1.2 None
SRR25167910 Other La1.2 None
ERR6198396 Other La1.2 None
ERR4769454 Other La1.2 None
ERR4769563 Other La1.2 None
ERR4769515 Other La1.2 None
ERR971389 Sensitive lineage4.9 None
ERR6198393 Other La1.2 None
ERR6336684 Other La1.2 None
ERR6338297 Other La1.2 None
ERR6338299 Other La1.2 None
ERR2179839 Sensitive lineage3 cn
ERR6210212 Other La1.2 None
ERR926164 Other lineage4.9 None
ERR6338303 Other La1.2 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
ERR6338365 Other La1.2 None
ERR4769411 Other La1.2 None
ERR6210207 Other La1.2 None
ERR4772229 Other La1.2 None
ERR6338300 Other La1.2 None
ERR6198210 Other La1.2 None
ERR6198398 Other La1.2 None
ERR6337410 Other La1.2 None
ERR6201839 Other La1.2 None
ERR4769562 Other La1.2 None
ERR6201852 Other La1.2 None
ERR13285191 Sensitive lineage4.9 None
ERR6209491 Other La1.2 None
ERR4195812 Other La1.2 None
SRR5486075 Other La1.2 None
ERR6201815 Other La1.2 None
ERR6201872 Other La1.2 None
ERR6201855 Other La1.2 None
SRR21690642 Other La1.2 None
ERR6201851 Other La1.2 None
ERR6336660 Other La1.2 None
ERR6337350 Other La1.2 None
ERR6337392 Other La1.2 None
ERR6338270 Other La1.2 None
ERR3290633 Other lineage4.2;lineage4.6.3;lineage4.9.1 None
SRR7851374 Other La1.2 None
ERR6198208 Other La1.2 None
ERR6338305 Other La1.2 None
ERR6209350 Other La1.2 None
ERR6209353 Other La1.2 None
ERR6209351 Other La1.2 None
ERR6337347 Other La1.2 None
ERR6338369 Other La1.2 None
ERR6338363 Other La1.2 None
SRR7851345 Other La1.2 None
ERR11067212 Other La1.2 None
ERR6338296 Other La1.2 None
ERR6201820 Other La1.2 None
ERR6209309 Other La1.2 None
SRR25167913 Other La1.2 None
ERR6338368 Other La1.2 None
ERR6337359 Other La1.2 None
ERR4769478 Other La1.2 None
SRR15296934 Other La1.2 None
ERR6201864 Other La1.2 None
ERR6201798 Other La1.2 None
ERR6358027 Other La1.2 None
ERR6337355 Other La1.2 None
ERR6210258 Other La1.2 None
ERR6338280 Other La1.2 None
ERR6337340 Other La1.2 None
ERR6209492 Other La1.2 None
ERR6201868 Other La1.2 None
SRR7851321 Other La1.2 None
ERR6201893 Other La1.2 None