Run ID: ERR4772218
Sample name:
Date: 01-04-2023 06:45:38
Number of reads: 1248542
Percentage reads mapped: 85.79
Strain: La1.2
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
La1 | M.bovis | None | None | 1.0 |
La1.2 | M.bovis | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
pncA | 2289073 | p.His57Asp | missense_variant | 1.0 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5752 | c.513G>A | synonymous_variant | 1.0 |
gyrA | 6406 | c.-896C>T | upstream_gene_variant | 1.0 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7821 | c.520C>T | synonymous_variant | 1.0 |
gyrA | 8285 | c.984C>T | synonymous_variant | 1.0 |
gyrA | 8741 | c.1440C>T | synonymous_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 761152 | p.Leu449Gln | missense_variant | 0.35 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 777141 | p.Val447Gly | missense_variant | 0.12 |
mmpR5 | 779176 | p.Ser63Cys | missense_variant | 0.15 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
embR | 1417294 | c.54A>C | synonymous_variant | 0.12 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472659 | n.814G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472669 | n.824_825insTAG | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472677 | n.832C>G | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472678 | n.833T>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472679 | n.834_835insAC | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472684 | n.841_846delGATCCG | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472697 | n.852T>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472700 | n.855C>T | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472705 | n.860G>A | non_coding_transcript_exon_variant | 0.57 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472715 | n.870C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472779 | n.934G>A | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472786 | n.941C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472953 | n.1109_1112delTCTC | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472959 | n.1114_1115insTTTA | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472971 | n.1126G>T | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472973 | n.1128A>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472975 | n.1130T>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472982 | n.1137G>C | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472987 | n.1142G>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472988 | n.1143T>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472991 | n.1146G>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472992 | n.1147A>T | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473002 | n.1157G>T | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1473008 | n.1163C>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473020 | n.1175T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1473053 | n.1208T>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1474777 | n.1120T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474779 | n.1122G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474782 | n.1125G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474790 | n.1133C>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474798 | n.1141C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474804 | n.1147C>T | non_coding_transcript_exon_variant | 0.47 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.6 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.53 |
rrl | 1474831 | n.1174A>C | non_coding_transcript_exon_variant | 0.53 |
rrl | 1474844 | n.1187G>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1474866 | n.1209C>A | non_coding_transcript_exon_variant | 0.42 |
rrl | 1474869 | n.1212G>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1474896 | n.1239A>G | non_coding_transcript_exon_variant | 0.44 |
rrl | 1474902 | n.1245T>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.46 |
rrl | 1474905 | n.1248T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474913 | n.1256T>A | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474920 | n.1263G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474927 | n.1271delC | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474931 | n.1274G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474938 | n.1281G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475822 | n.2165A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476221 | n.2564T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476229 | n.2572C>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.72 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476523 | n.2866T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476573 | n.2916A>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476577 | n.2920T>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476603 | n.2946G>A | non_coding_transcript_exon_variant | 0.29 |
fabG1 | 1673795 | p.Val119Glu | missense_variant | 0.15 |
rpsA | 1834859 | p.Ala440Thr | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102106 | p.Gly313Arg | missense_variant | 1.0 |
ndh | 2103173 | c.-132delG | upstream_gene_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155191 | c.921A>C | synonymous_variant | 0.18 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
katG | 2156025 | c.87C>A | synonymous_variant | 1.0 |
katG | 2156236 | c.-126delA | upstream_gene_variant | 0.12 |
katG | 2156465 | c.-354C>T | upstream_gene_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168011 | p.Ser868Arg | missense_variant | 1.0 |
PPE35 | 2168814 | c.1798dupA | frameshift_variant | 1.0 |
PPE35 | 2169063 | p.Met517Arg | missense_variant | 0.25 |
PPE35 | 2169427 | p.Pro396Thr | missense_variant | 0.17 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.35 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.39 |
Rv1979c | 2222204 | p.Phe321Leu | missense_variant | 0.15 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
kasA | 2518561 | c.447T>A | synonymous_variant | 0.14 |
ribD | 2987024 | p.Met62Ile | missense_variant | 0.22 |
Rv2752c | 3065888 | p.Val102Ile | missense_variant | 1.0 |
thyX | 3067786 | p.Thr54Ala | missense_variant | 1.0 |
thyA | 3074174 | p.Ser100Thr | missense_variant | 0.12 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
fbiD | 3339154 | p.Ile13Leu | missense_variant | 1.0 |
Rv3083 | 3448745 | p.Ile81Ser | missense_variant | 1.0 |
Rv3083 | 3448783 | p.Val94Ile | missense_variant | 1.0 |
fprA | 3473891 | c.-116A>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474427 | p.Val141Ile | missense_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
whiB7 | 3568618 | c.61delC | frameshift_variant | 0.14 |
fbiA | 3641441 | p.Gly300Glu | missense_variant | 0.12 |
rpoA | 3877680 | c.828G>A | synonymous_variant | 0.15 |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242970 | c.-263C>T | upstream_gene_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embB | 4246551 | p.Asn13Ser | missense_variant | 0.89 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4246944 | p.Gln144Arg | missense_variant | 0.12 |
embB | 4247028 | p.Leu172Arg | missense_variant | 0.18 |
embB | 4247173 | c.660G>A | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
embB | 4247771 | p.Glu420Gln | missense_variant | 0.15 |
aftB | 4267858 | p.Ile327Val | missense_variant | 1.0 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407743 | p.Arg154Trp | missense_variant | 1.0 |
gid | 4407919 | p.Leu95Pro | missense_variant | 0.25 |