lineage | Count |
---|---|
lineage4.3.2 | 5 |
lineage4.1.2.1 | 6 |
La1.8.1 | 7 |
lineage4.9 | 7 |
lineage4.1.1.3 | 4 |
lineage4.8 | 18 |
lineage2.2.1 | 11 |
lineage4.4.1.1 | 2 |
lineage1.1.1 | 2 |
lineage3.1.3 | 1 |
lineage1.1.3.1 | 1 |
lineage4.3.3 | 7 |
lineage4.2.2.2 | 1 |
lineage4.5 | 2 |
lineage3 | 9 |
lineage6.1.3 | 1 |
lineage1.2.2.2 | 1 |
La2 | 1 |
La1.2 | 1 |
lineage3.1.2.1 | 1 |
lineage4.3.1.1 | 2 |
lineage4.3.4.2.1 | 2 |
lineage4.4.2 | 2 |
lineage4 | 2 |
lineage4.3.2.1 | 1 |
lineage4.2.1.1 | 2 |
lineage1.2.1.2.1 | 3 |
lineage4.3.4.1;lineage6.1.1 | 1 |
lineage1.1.3.2 | 1 |
lineage3.1.2 | 1 |
lineage3.1.1 | 1 |
lineage2.2.1.1 | 1 |
lineage1.1.1.1 | 1 |
lineage4.3.4.2 | 1 |
spoligotype | Count |
---|---|
None | 109 |
ID | Drug resistance | Lineage | Country iso2 | SRR21690416 | RR-TB | lineage4.3.2 | None | SRR19276600 | RR-TB | lineage4.1.2.1 | None | SRR7240143 | RR-TB | La1.8.1 | None | ERR4820418 | RR-TB | lineage4.9 | None | ERR9117769 | RR-TB | lineage4.1.1.3 | None | SRR1792315 | Pre-XDR-TB | La1.8.1 | None | SRR21689911 | RR-TB | lineage4.8 | None | ERR3276154 | RR-TB | lineage4.3.2 | nl | ERR10868818 | Pre-XDR-TB | lineage2.2.1 | None | ERR12545827 | RR-TB | lineage2.2.1 | None | SRR13591365 | RR-TB | lineage4.4.1.1 | None | ERR2446302 | RR-TB | lineage1.1.1 | nl | ERR4820823 | RR-TB | lineage3.1.3 | None | SRR7070171 | RR-TB | lineage1.1.3.1 | None | ERR9121624 | RR-TB | lineage4.3.3 | None | SRR28045591 | MDR-TB | lineage4.2.2.2 | None | ERR12549777 | RR-TB | lineage4.8 | None | ERR12544298 | RR-TB | lineage4.8 | None | ERR4818287 | RR-TB | lineage4.5 | gb | ERR4818326 | RR-TB | lineage4.9 | None | ERR2514579 | RR-TB | lineage3 | gb | ERR9787019 | RR-TB | lineage6.1.3 | None | ERR10868477 | MDR-TB | lineage2.2.1 | None | SRR16058618 | RR-TB | lineage4.8 | None | ERR2503541 | RR-TB | lineage4.8 | fi | SRR7240378 | RR-TB | La1.8.1 | None | SRR12882314 | RR-TB | lineage1.2.2.2 | None | ERR4195567 | RR-TB | lineage4.3.3 | None | ERR10430712 | RR-TB | La2 | None | ERR12544442 | RR-TB | lineage4.8 | None | ERR10877861 | MDR-TB | lineage2.2.1 | None | SRR7070194 | RR-TB | lineage3 | None | ERR10877856 | MDR-TB | lineage2.2.1 | None | SRR14296390 | RR-TB | La1.8.1 | None | ERR3063118 | RR-TB | lineage4.4.1.1 | None | SRR7069395 | RR-TB | lineage4.3.3 | None | ERR2514677 | RR-TB | lineage4.3.3 | gb | ERR2517559 | RR-TB | lineage4.3.3 | nl | SRR6484913 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046078 | RR-TB | lineage4.9 | gb | ERR3275406 | RR-TB | lineage1.1.1 | nl | SRR6785241 | RR-TB | lineage4.8 | None | ERR4772218 | RR-TB | La1.2 | None | ERR2509685 | RR-TB | lineage3.1.2.1 | gb | SRR7069543 | MDR-TB | lineage4.8 | None | ERR2517528 | RR-TB | lineage3 | nl | SRR8237383 | RR-TB | lineage2.2.1 | ch | ERR13290081 | RR-TB | lineage4.9 | None | ERR2516104 | RR-TB | lineage4.3.2 | es | ERR4819496 | RR-TB | lineage3 | None | ERR13290031 | RR-TB | lineage4.3.1.1 | None | SRR6044937 | MDR-TB | lineage4.3.4.2.1 | gb | SRR1573707 | RR-TB | lineage4.4.2 | None | ERR4815540 | Pre-XDR-TB | lineage4.3.3 | None | ERR4817171 | RR-TB | lineage4.1.2.1 | gb | SRR21690217 | RR-TB | lineage4.8 | None | SRR19276615 | MDR-TB | lineage4 | None | ERR9121681 | RR-TB | lineage4.3.2 | None | ERR4814437 | RR-TB | lineage4.1.2.1 | None | SRR1791890 | RR-TB | La1.8.1 | None | ERR2229370 | RR-TB | lineage4.8 | None | ERR2512679 | RR-TB | lineage3 | gb | SRR16058501 | RR-TB | lineage4.8 | None | SRR3055717 | RR-TB | lineage4.3.2.1 | None | ERR2229747 | RR-TB | lineage4.8 | dk | SRR7069276 | RR-TB | lineage3 | None | ERR12544390 | RR-TB | lineage4.2.1.1 | None | ERR4403842 | RR-TB | lineage2.2.1 | None | SRR13591415 | RR-TB | lineage4.8 | None | ERR10868185 | Pre-XDR-TB | lineage2.2.1 | None | ERR2229458 | RR-TB | lineage4.8 | dk | ERR2514481 | RR-TB | lineage3 | gb | ERR4195598 | RR-TB | lineage4.3.2 | None | SRR7069719 | RR-TB | lineage4.1.1.3 | None | ERR13289634 | MDR-TB | lineage4.3.4.2.1 | None | ERR6336755 | RR-TB | lineage1.2.1.2.1 | None | ERR2512511 | RR-TB | lineage4.1.1.3 | gb | SRR6046422 | RR-TB | lineage4.3.1.1 | gb | ERR9786771 | RR-TB | lineage4.3.4.1;lineage6.1.1 | None | SRR7069634 | RR-TB | lineage4.1.2.1 | None | ERR552832 | RR-TB | lineage4.5 | de | SRR19276599 | XDR-TB | lineage4.3.3 | None | SRR12882666 | RR-TB | lineage3 | None | ERR12545823 | RR-TB | lineage4.8 | None | ERR1949999 | RR-TB | lineage4.8 | None | SRR5657366 | RR-TB | La1.8.1 | mx | ERR4827893 | MDR-TB | lineage2.2.1 | None | ERR9124898 | RR-TB | lineage4.4.2 | None | ERR13289746 | MDR-TB | lineage1.2.1.2.1 | None | SRR6045039 | MDR-TB | lineage1.2.1.2.1 | gb | ERR4820260 | RR-TB | lineage4.9 | None | ERR4820974 | RR-TB | lineage4 | None | SRR29440790 | RR-TB | lineage1.1.3.2 | None | ERR9125060 | RR-TB | lineage4.8 | None | ERR4814586 | RR-TB | lineage3.1.2 | gb | SRR5657508 | RR-TB | La1.8.1 | mx | SRR7070344 | RR-TB | lineage3 | None | SRR6484932 | RR-TB | lineage2.2.1 | None | SRR7068925 | RR-TB | lineage3.1.1 | None | ERR12544262 | RR-TB | lineage4.2.1.1 | None | SRR21691089 | RR-TB | lineage2.2.1.1 | None | ERR13093908 | RR-TB | lineage4.1.2.1 | None | ERR4818309 | RR-TB | lineage4.9 | None | SRR12882751 | RR-TB | lineage1.1.1.1 | None | ERR4817486 | RR-TB | lineage4.9 | None | ERR9125381 | RR-TB | lineage4.8 | None | ERR4818280 | RR-TB | lineage4.1.2.1 | gb | ERR7363086 | RR-TB | lineage4.3.4.2 | None | SRR7070623 | RR-TB | lineage4.1.1.3 | None |
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