Rv2245 - c.-198G>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
18 Sensitive
3 RR-TB
27 HR-TB
8 MDR-TB
0 Pre-XDR-TB
2 XDR-TB
26 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.2 | 1 |
| lineage4.1.1.3 | 2 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.6.2.2 | 2 |
| lineage4 | 1 |
| lineage2.2.1 | 6 |
| 2 | |
| lineage4.9 | 36 |
| lineage2.2.1.2 | 1 |
| lineage4.9;lineage7 | 1 |
| M.canetti;lineage2.2 | 2 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage4.3.4 | 2 |
| lineage1;lineage4.9 | 1 |
| La1.2 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4.1.2 | 1 |
| lineage4.2;lineage4.9 | 2 |
| La3;lineage4.9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.5 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage1.1.2 | 1 |
| lineage4.1 | 1 |
| lineage3 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage1.1.3.2 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1.6;lineage4 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La2;lineage2.2 | 1 |
| lineage2.2 | 1 |
| La2;lineage4.9 | 2 |
| lineage2.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 84 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4818252 | Sensitive | lineage4.1.1.2 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR9786525 | Other | lineage4 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR12006550 | Sensitive | None | ERR176779 | HR-TB | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR29096203 | Sensitive | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR4769427 | Other | La1.2 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR161037 | Other | lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR13265708 | Sensitive | lineage2.2.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR29096717 | Sensitive | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR736831 | Other | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR29096276 | Sensitive | lineage4.9 | None | SRR29096879 | Sensitive | lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR9786526 | Other | lineage4.1 | None | ERR990545 | Other | lineage3 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR29097023 | Sensitive | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR29096107 | Sensitive | lineage4.9 | None | SRR28868888 | Other | lineage1.1.3.2 | None | ERR176740 | Other | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR9786843 | Other | None | ERR736875 | HR-TB | lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR6866807 | Other | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None |
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