Rv0006 - c.2044A>C
Drug resistance types
32 Sensitive
2 RR-TB
164 HR-TB
9 MDR-TB
6 Pre-XDR-TB
0 XDR-TB
86 Other
lineage Counts
| lineage | Count |
|---|---|
| 150 | |
| lineage4.9 | 28 |
| lineage4 | 36 |
| La1.8.1 | 2 |
| lineage4.6.2.2 | 2 |
| lineage4.1.3 | 2 |
| lineage4;lineage3.1 | 1 |
| lineage3 | 4 |
| La1 | 2 |
| lineage2.2 | 8 |
| lineage3.1.2 | 1 |
| lineage4.3.3 | 2 |
| lineage4.6.1.1 | 1 |
| La1.2 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage4.3.2 | 2 |
| lineage4.3.4 | 2 |
| lineage2.2.1 | 12 |
| lineage1.1.3.1 | 1 |
| lineage4.4.1.1 | 4 |
| lineage4.3.4.2 | 1 |
| lineage6.3.1 | 1 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage2.2.2 | 1 |
| lineage4.1.2.1 | 7 |
| lineage2.2.1.1 | 2 |
| lineage1.2.1.2 | 1 |
| lineage4.3.4.1 | 3 |
| lineage4.5 | 1 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage4.9;lineage4.6.3 | 1 |
| lineage4.1 | 1 |
| lineage4.1.1.3 | 2 |
| lineage4.3.4.2.1 | 3 |
| lineage3;lineage2.1 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.1.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.7 | 1 |
| lineage3.1 | 2 |
| lineage1.1 | 1 |
| La2 | 1 |
| lineage4.4.1.1;lineage1.2.2.1 | 1 |
| lineage4.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 299 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3283021 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283028 | Other | None | ERR3283024 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283051 | Other | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3445504 | HR-TB | None | ERR3439432 | Other | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR3445503 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797048 | HR-TB | None | ERR373945 | HR-TB | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797014 | Other | None | ERR3797043 | HR-TB | None | ERR3797044 | Other | None | ERR3797015 | HR-TB | None | ERR3797017 | Other | None | ERR3797036 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797063 | HR-TB | None | ERR3797061 | Other | None | ERR3797069 | Other | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR3797086 | Other | lineage4.9 | None | ERR4188350 | HR-TB | None | ERR387051 | HR-TB | None | ERR5336148 | Other | None | ERR405209 | Sensitive | lineage4 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR403298 | HR-TB | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR473332 | Other | lineage4 | None | ERR4769450 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4798406 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769521 | HR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798262 | HR-TB | La1 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799025 | Pre-XDR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR4811493 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6198317 | Other | La1.2 | None | ERR6866410 | Sensitive | None | ERR6358837 | HR-TB | None | ERR6358979 | Other | None | ERR6359045 | HR-TB | None | ERR6359066 | HR-TB | lineage4 | None | ERR6866547 | Sensitive | lineage4 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR6866807 | HR-TB | lineage4 | None | ERR702404 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736865 | HR-TB | None | ERR736867 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR8976043 | HR-TB | None | ERR9117709 | HR-TB | None | ERR9119669 | HR-TB | None | ERR9125167 | Sensitive | lineage4.4.1.1 | None | ERR9786346 | Sensitive | lineage4.3.4.2 | None | ERR9786843 | Other | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR990545 | Other | lineage3 | None | ERR987722 | HR-TB | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR10808805 | Sensitive | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1172310 | HR-TB | None | SRR1174897 | HR-TB | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR13861304 | Other | lineage4.9 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13861163 | Sensitive | lineage4.9 | None | SRR13861532 | Other | lineage4.9 | None | SRR13861556 | Other | lineage4.9 | None | SRR16058079 | Sensitive | lineage4.4.1.1 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR14801749 | Sensitive | None | SRR14782405 | HR-TB | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR8692897 | Other | lineage4.9 | None | SRR8692893 | Other | lineage4.9 | None | SRR19303884 | HR-TB | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR8692791 | Other | lineage4.9 | None | ERR4815604 | HR-TB | None | ERR176778 | HR-TB | None | ERR176779 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR6325445 | HR-TB | None | SRR3675502 | Other | None | SRR3675465 | HR-TB | None | ERR158583 | HR-TB | None | ERR1035239 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675482 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675488 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR181887 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR181744 | HR-TB | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675501 | HR-TB | None | SRR3675221 | HR-TB | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675236 | HR-TB | None | SRR3675234 | Other | None | ERR181824 | HR-TB | lineage4 | None | SRR3675311 | Other | None | SRR3675383 | HR-TB | None | ERR176651 | HR-TB | None | ERR176740 | HR-TB | None | ERR4815752 | Other | lineage4.9 | None | ERR212034 | HR-TB | None | SRR3675456 | HR-TB | None | SRR3675545 | HR-TB | None | SRR3675550 | Other | None | ERR176751 | HR-TB | None | ERR4816999 | Other | None | ERR212001 | HR-TB | None | SRR3675558 | HR-TB | None | SRR3675555 | HR-TB | None | SRR3675572 | Other | None | ERR212123 | Other | None | ERR212121 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR4816585 | Other | lineage2.2 | None | ERR212138 | HR-TB | lineage4 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR7496472 | Other | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4818021 | Other | La1.8.1 | None | ERR1035162 | Other | None | ERR4818252 | Other | lineage4.1.1.2 | None | SRR5341456 | Other | None | ERR4818615 | Other | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341418 | Other | None | ERR4821053 | Other | lineage3 | None | ERR6359082 | Other | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341470 | HR-TB | None | ERR1023509 | Other | None | ERR4819932 | Other | lineage4.7 | None | SRR5341330 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693231 | Other | None | ERR2693239 | HR-TB | None | ERR2693230 | Other | None | SRR5535933 | HR-TB | None | ERR2693254 | Other | None | ERR2693257 | Other | None | ERR278594 | HR-TB | None | SRR6045555 | HR-TB | None | ERR2693227 | Other | lineage4.9 | None | ERR4821655 | Sensitive | lineage4 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6046133 | HR-TB | None | ERR2693232 | Other | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6045952 | HR-TB | None | SRR6044890 | Other | lineage4.9 | None | SRR6044855 | Other | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045053 | Other | None | SRR6046066 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6045233 | HR-TB | None | SRR6046046 | Other | None | SRR6046305 | Other | lineage4.9 | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046299 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6046460 | HR-TB | None | ERR4830353 | Other | None | SRR6046482 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046824 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6325442 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831117 | HR-TB | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR294248 | HR-TB | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | ERR502524 | HR-TB | La2 | None | ERR11465711 | Other | lineage4.4.1.1;lineage1.2.2.1 | None | ERR323036 | HR-TB | None | ERR502889 | Other | None | ERR323038 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR5311090 | HR-TB | None | SRR8217918 | HR-TB | None | SRR7496509 | Other | None | SRR7535086 | Other | None | ERR323041 | HR-TB | None | ERR323039 | HR-TB | None | ERR323055 | HR-TB | None | ERR323045 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323053 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR11465015 | Sensitive | lineage4.3.4.2.1 | None | ERR067681 | HR-TB | None | ERR323063 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR1063862 | HR-TB | None | ERR1063855 | Other | lineage4 | None | ERR1063857 | HR-TB | None | ERR1063858 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR1063859 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR11465511 | Sensitive | lineage4.3.4.2.1 | None | ERR323115 | Sensitive | lineage4 | None | ERR133986 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283014 | HR-TB | None |
|---|
