lineage | Count |
---|---|
43 | |
lineage4.3.4 | 1 |
lineage4 | 5 |
lineage4.3.3 | 3 |
lineage4.1.2.1.1 | 1 |
lineage4.3.2 | 1 |
lineage4.1.2.1 | 12 |
lineage4.1.1.3 | 2 |
lineage6 | 1 |
lineage2.2.2 | 3 |
lineage2 | 1 |
lineage4.8;lineage4.3.3 | 4 |
lineage2.2.1 | 16 |
lineage4.4.1.1 | 1 |
lineage2.2.1.1 | 2 |
lineage4.9 | 27 |
lineage4.5 | 1 |
lineage1.2.1.2.1 | 1 |
La1.8.1 | 3 |
lineage3 | 2 |
La1.7.1 | 1 |
lineage9;lineage3.1 | 1 |
lineage4.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.3.4.2.1 | 2 |
lineage4.8 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage1.1 | 1 |
lineage3.1 | 2 |
lineage4.7 | 1 |
lineage4.3.4.1 | 1 |
spoligotype | Count |
---|---|
None | 143 |
ID | Drug resistance | Lineage | Country iso2 | ERR6358837 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR6359045 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR9119669 | HR-TB | None | ERR8976043 | HR-TB | None | ERR9119096 | Other | lineage4.3.3 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR9787033 | Sensitive | lineage6 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | SRR069989 | HR-TB | lineage2 | None | SRR1049676 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR13861153 | Other | lineage4.9 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13837642 | RR-TB | lineage4.9 | None | SRR13837853 | Sensitive | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR13837638 | Other | lineage4.9 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13861288 | Other | lineage4.9 | None | SRR13861243 | HR-TB | lineage4.9 | None | SRR13861296 | Sensitive | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861519 | Other | lineage4.9 | None | SRR13861372 | Other | lineage4.9 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13861400 | Other | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861556 | Other | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | SRR13861611 | Sensitive | lineage4.9 | None | SRR16156775 | Other | lineage4.9 | None | SRR13861636 | Sensitive | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR13861666 | Sensitive | lineage4.9 | None | SRR1791696 | Other | La1.8.1 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR17658565 | Other | lineage3 | None | SRR1640750 | HR-TB | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR3675482 | HR-TB | None | SRR22424765 | MDR-TB | lineage4 | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR161033 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675486 | HR-TB | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR3675545 | HR-TB | None | SRR3675558 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR163965 | Sensitive | lineage4.3.4.2.1 | mw | SRR3675383 | HR-TB | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR2509673 | Other | lineage2.2.1 | None | ERR4818607 | Sensitive | lineage4.9 | None | ERR2514352 | Other | La1.8.1 | None | ERR2693239 | HR-TB | None | ERR4821053 | Other | lineage3 | None | SRR6046133 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6046015 | Other | lineage4.9 | None | SRR6325442 | HR-TB | None | ERR278594 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046644 | HR-TB | None | ERR5311090 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR3077978 | Other | lineage1.1 | None | SRR6831950 | Other | lineage4.3.3 | None | ERR323036 | HR-TB | None | ERR4831117 | HR-TB | None | ERR294248 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR323038 | HR-TB | None | SRR7496471 | Sensitive | None | SRR7496523 | Other | lineage4.7 | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323041 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR7796666 | Pre-XDR-TB | lineage2.2.1 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR323063 | HR-TB | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR1034634 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3468544 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797083 | HR-TB | None | ERR4188350 | HR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR473332 | Other | lineage4 | None | ERR4811493 | HR-TB | None | ERR4796577 | MDR-TB | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR6326069 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR5917710 | Other | lineage4.1.2.1 | None |
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