Rv0005 - c.1060C>T
Drug resistance types
19 Sensitive
2 RR-TB
84 HR-TB
6 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
33 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9;lineage4.6.3 | 1 |
| lineage4.1.2.1 | 8 |
| 67 | |
| lineage4.1 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage4.9 | 24 |
| lineage4 | 11 |
| lineage4.1.1.3 | 1 |
| lineage4.1.1 | 1 |
| lineage3 | 5 |
| La1.8.1 | 4 |
| lineage2.2.1 | 7 |
| lineage1.1 | 1 |
| lineage4.9.1 | 1 |
| lineage3.1 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage3.1.2 | 1 |
| lineage4.3.3 | 2 |
| lineage4.1.2.1.1 | 1 |
| lineage4.3.2 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2 | 1 |
| lineage4.5 | 1 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage4.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 146 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | ERR11068932 | Sensitive | lineage4.1.2.1 | None | ERR158583 | HR-TB | None | SRR3675502 | Other | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675482 | HR-TB | None | SRR3675488 | HR-TB | None | SRR3675456 | HR-TB | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675501 | HR-TB | None | SRR3675222 | Other | None | SRR3675383 | HR-TB | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR4815550 | Other | lineage4 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR212121 | HR-TB | None | ERR4816466 | HR-TB | None | SRR3675545 | HR-TB | None | SRR3675550 | Other | None | SRR3675555 | HR-TB | None | ERR212034 | HR-TB | None | SRR3675558 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR1035162 | Other | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR3275220 | Other | lineage3 | nl | ERR4819051 | Other | lineage4 | None | ERR2693239 | HR-TB | None | ERR1023509 | Other | None | ERR4821053 | Other | lineage3 | None | ERR4818607 | Sensitive | lineage4.9 | None | SRR5341418 | Other | None | ERR2446144 | Other | lineage3 | nl | SRR6045555 | HR-TB | None | ERR278594 | HR-TB | None | ERR2747634 | Other | La1.8.1 | None | SRR6045519 | HR-TB | None | ERR4821655 | Sensitive | lineage4 | None | SRR6046133 | HR-TB | None | SRR6045010 | Other | lineage4 | None | SRR6045952 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046362 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | ERR2517528 | Other | lineage3 | nl | SRR6046514 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6325447 | HR-TB | None | SRR6046824 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR11466062 | Sensitive | lineage4.9.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6325442 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR294248 | HR-TB | None | ERR4831117 | HR-TB | None | ERR502889 | Other | None | ERR323036 | HR-TB | None | ERR323038 | HR-TB | None | ERR5311099 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR5311090 | HR-TB | None | SRR8217918 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323063 | HR-TB | None | ERR323055 | HR-TB | None | ERR323041 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323108 | HR-TB | lineage4 | None | ERR067681 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR067699 | HR-TB | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR133825 | Sensitive | lineage4 | None | ERR133986 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283017 | HR-TB | None | ERR3797060 | Other | La1.8.1 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR3797016 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797036 | HR-TB | None | ERR3439432 | Other | None | ERR3468544 | HR-TB | None | ERR363453 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR387051 | HR-TB | None | ERR6358837 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4798504 | Other | lineage3 | None | ERR4811493 | HR-TB | None | ERR403298 | HR-TB | lineage4 | None | ERR4188247 | HR-TB | None | ERR4798406 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6866547 | Sensitive | lineage4 | None | ERR6358991 | HR-TB | None | ERR736848 | HR-TB | None | ERR736837 | Other | lineage4.9 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | SRR22251152 | MDR-TB | lineage2.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR8976043 | HR-TB | None | ERR9119096 | Other | lineage4.3.3 | None | SRR1172717 | Other | lineage4.9 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR13837697 | HR-TB | lineage4.9 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR13837684 | Sensitive | lineage4.9 | None | SRR13861415 | Other | lineage4.9 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861266 | Sensitive | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861686 | RR-TB | lineage4.9 | None | SRR13861573 | Other | lineage4.9 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR1640750 | HR-TB | None | SRR1791696 | Other | La1.8.1 | None | SRR19295647 | Sensitive | lineage4.9 | None |
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