lineage | Count |
---|---|
lineage6.3;lineage2.2.1 | 1 |
lineage3;lineage2.2.1 | 1 |
lineage4.1.1 | 2 |
152 | |
lineage2.2.1 | 14 |
lineage4.3.4.2.1 | 3 |
lineage2.1 | 2 |
lineage4.3 | 1 |
lineage4 | 35 |
lineage2.2 | 5 |
lineage4.9 | 11 |
lineage4.4.1.1 | 1 |
lineage4.8 | 2 |
lineage4.8;La3 | 1 |
La1.8.1 | 2 |
lineage4.1.2 | 2 |
lineage4.1.1.2 | 1 |
lineage4.1.2.1 | 8 |
lineage4;lineage1.1 | 1 |
lineage4.9;lineage2.1 | 1 |
lineage4.7 | 1 |
lineage5.2 | 2 |
lineage4.9.1 | 1 |
La2 | 1 |
lineage4.3.4.1 | 1 |
La1 | 2 |
lineage4.1.3 | 2 |
lineage3 | 2 |
La1.2 | 1 |
lineage2 | 3 |
lineage3.1.2 | 1 |
lineage4.6.1.1 | 1 |
lineage1.1.3.1 | 1 |
lineage4.3.2 | 1 |
lineage1.1.2 | 2 |
lineage4.6.2.2 | 1 |
lineage6 | 1 |
lineage6.3.1 | 1 |
La3 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage4.3.3 | 3 |
lineage2.2.1.1 | 3 |
lineage3.1 | 1 |
lineage4.5 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
spoligotype | Count |
---|---|
None | 282 |
ID | Drug resistance | Lineage | Country iso2 | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | ERR176793 | Other | lineage4.1.1 | None | ERR4815604 | HR-TB | None | SRR3675465 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675488 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675221 | HR-TB | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675236 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675501 | HR-TB | None | SRR3675270 | HR-TB | None | ERR176751 | HR-TB | None | ERR176643 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675311 | Other | None | SRR3675510 | Other | None | SRR3675502 | Other | None | ERR4816999 | Other | None | ERR2027263 | Other | lineage4 | None | SRR3675550 | Other | None | ERR212001 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR212033 | HR-TB | None | ERR4817060 | RR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR4816466 | HR-TB | None | SRR3675571 | HR-TB | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3742665 | HR-TB | None | SRR3675572 | Other | None | SRR3675574 | HR-TB | None | ERR502912 | Other | lineage2.2.1 | None | ERR234659 | HR-TB | None | ERR4817735 | Other | lineage4.8 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR1035162 | Other | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR7496472 | Other | None | ERR4818021 | Other | La1.8.1 | None | SRR5341387 | Other | lineage4 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818394 | Other | lineage4.9 | None | SRR5341453 | Sensitive | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341308 | Sensitive | lineage4 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | SRR5341418 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341300 | Other | lineage4 | None | ERR2514692 | Other | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341302 | HR-TB | None | SRR6046133 | HR-TB | None | ERR2514821 | Other | lineage2.2.1 | None | SRR5341333 | HR-TB | None | SRR5341470 | HR-TB | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR6045503 | HR-TB | None | SRR6045519 | HR-TB | None | SRR6045555 | HR-TB | None | ERR1023509 | Other | None | ERR4819932 | Other | lineage4.7 | None | SRR5341330 | HR-TB | None | SRR6045526 | HR-TB | None | SRR5535933 | HR-TB | None | SRR6046046 | Other | None | SRR6045892 | Sensitive | None | SRR6044790 | HR-TB | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045053 | Other | None | SRR6046066 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6325444 | HR-TB | None | SRR6046397 | Other | None | ERR4830353 | Other | None | SRR6325448 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046824 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6511621 | HR-TB | None | ERR11466062 | Sensitive | lineage4.9.1 | None | ERR502510 | Sensitive | lineage4 | None | ERR4831117 | HR-TB | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR6832249 | Other | lineage2.2.1 | None | SRR6789626 | Other | None | ERR294266 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502889 | Other | None | ERR502532 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR5311099 | HR-TB | None | SRR7496509 | Other | None | SRR8217918 | HR-TB | None | ERR323039 | HR-TB | None | SRR7496517 | Other | None | SRR7535082 | Sensitive | lineage4 | None | SRR7535086 | Other | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR323043 | HR-TB | None | ERR323053 | HR-TB | None | ERR11466499 | Other | lineage4.3.4.1 | None | ERR067681 | HR-TB | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR133986 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283036 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3439432 | Other | None | ERR3797046 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3797036 | HR-TB | None | ERR3797058 | Other | lineage4.9 | None | ERR3797069 | Other | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR473332 | Other | lineage4 | None | ERR4769452 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4797264 | Sensitive | None | ERR4797474 | Other | None | ERR4024991 | Other | None | ERR403298 | HR-TB | lineage4 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4798099 | Other | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798406 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4800341 | Other | lineage3 | None | ERR4811493 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR5336148 | Other | None | ERR6866022 | Other | None | ERR6358979 | Other | None | ERR6358991 | HR-TB | None | ERR6866410 | Sensitive | None | ERR702404 | HR-TB | None | ERR6866639 | Other | None | ERR736834 | Sensitive | lineage4 | None | ERR702406 | HR-TB | None | ERR736867 | HR-TB | None | ERR736865 | HR-TB | None | ERR736839 | Other | None | ERR736856 | HR-TB | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR751326 | Sensitive | lineage4 | None | ERR736874 | HR-TB | None | ERR9117709 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9634265 | Sensitive | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786604 | Other | None | ERR9786671 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786843 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1169249 | Other | La3 | None | ERR9787197 | Other | None | ERR987722 | HR-TB | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1169194 | Other | None | SRR10808805 | Sensitive | None | SRR1167384 | Other | lineage4 | None | SRR1172234 | Other | None | SRR1169306 | Other | None | SRR1172951 | Other | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1172857 | MDR-TB | None | SRR1173153 | HR-TB | None | SRR1173118 | Other | None | SRR1173363 | HR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1175049 | RR-TB | None | SRR1173484 | Other | lineage4 | None | SRR1174897 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1173778 | Other | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1175074 | MDR-TB | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1184294 | HR-TB | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1184381 | MDR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184372 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1184388 | Other | None | SRR1196494 | MDR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196566 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR1196677 | HR-TB | lineage2 | None | SRR12142341 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR19303884 | HR-TB | None | SRR14801749 | Sensitive | None | SRR15368973 | Other | None | SRR1791747 | Other | La1.8.1 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR12416824 | HR-TB | None | SRR1710057 | Other | lineage2.1 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18910194 | HR-TB | lineage2.2 | None | ERR11081257 | Other | lineage4.8 | None | SRR20969677 | HR-TB | lineage2 | None | SRR19304036 | HR-TB | None | SRR25827682 | Other | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR26159043 | Other | lineage4.9 | None |
---|