Rv0667 - c.2166C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
35 Sensitive
3 RR-TB
20 HR-TB
1 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
34 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 40 |
| lineage2.2.1 | 11 |
| lineage4.7 | 1 |
| La1.7 | 2 |
| La1.7;lineage4.9 | 4 |
| lineage4.1.2.1 | 1 |
| lineage4 | 2 |
| La3;lineage4.9 | 8 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage3 | 1 |
| lineage4.8 | 1 |
| La1;lineage4.9 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.9.1 | 2 |
| La1.7;M.canetti;lineage4.9 | 2 |
| La3;lineage4 | 1 |
| lineage4.3.4.2.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| M.canetti;lineage1 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4.3.4 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage6.1.3 | 1 |
| M.canetti;lineage4.9 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 94 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4818536 | Other | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR7496523 | Other | lineage4.7 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4819357 | Sensitive | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4769450 | Other | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR10808399 | Sensitive | lineage4.9 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR9786444 | Sensitive | lineage4.8 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR29017532 | Sensitive | lineage4.3.4.1 | None | SRR6044835 | Other | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | ERR11465189 | RR-TB | lineage4.9.1 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR4815471 | Sensitive | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR4830353 | Other | La1.7 | None | SRR6045347 | Other | lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR245758 | Other | lineage4.9.1 | None | SRR16156188 | Sensitive | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR7496471 | Sensitive | lineage4 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR29126302 | Sensitive | lineage4.3.4.1 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR9787153 | Other | lineage6.1.3 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR323037 | Other | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR29053265 | Sensitive | lineage2.2.1 | None | SRR3675441 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR28119827 | Other | La3;lineage4.9 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR19318145 | Sensitive | lineage2.2.1 | None | SRR20632814 | Sensitive | lineage4.9 | None |
|---|
