Rv0668 - c.1204_1206delCTTinsTG
Drug resistance types
1 Sensitive
22 RR-TB
6 HR-TB
64 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
16 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage2.1;lineage4.9 | 23 |
| lineage3 | 4 |
| lineage1;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 6 |
| lineage2.2.1 | 4 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| lineage4.1.2.1 | 7 |
| lineage4.9 | 13 |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4 | 1 |
| lineage4.4.1.1 | 1 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| lineage4.1.1.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| lineage2.1;lineage4.3.2 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| La1.7.1 | 1 |
| lineage4.2;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| 2 | |
| La3;M.canetti;lineage4.9 | 2 |
| lineage2.1;lineage4.9 | 4 |
| M.canetti;lineage4.9 | 1 |
| M.canetti;lineage2.2 | 1 |
| La1.8.1 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| M.canetti | 1 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| lineage1.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La2;M.canetti | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 110 |
Geographic prevalence
Country level data for this variant is available for 4 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675506 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR176658 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2517528 | RR-TB | lineage3 | nl | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR5311096 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR6045290 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR1165423 | RR-TB | lineage4.1.2.1 | None | ERR3468607 | RR-TB | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR3675243 | MDR-TB | lineage4.9 | None | ERR473314 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | SRR1165584 | Other | lineage4.1.2.1 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR8976043 | MDR-TB | lineage2.1;lineage2.2;lineage6.3 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR6046492 | Other | lineage4.9 | None | ERR4821053 | RR-TB | lineage3 | None | SRR3675558 | MDR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR5311098 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1163221 | MDR-TB | lineage4.1.2.1 | None | ERR2693228 | RR-TB | lineage4.9 | None | SRR3675545 | RR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR5311089 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797016 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR386953 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR038268 | MDR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | ERR9119138 | RR-TB | M.canetti;lineage4.3.1;lineage4.9 | None | ERR4816551 | MDR-TB | lineage4.1.1.3 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR2446144 | Other | lineage3 | nl | SRR6044815 | RR-TB | lineage4.9 | None | ERR772255 | MDR-TB | lineage2.1;lineage4.3.2 | None | SRR3675450 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR3675494 | RR-TB | lineage4.9 | None | ERR323041 | MDR-TB | M.canetti;lineage2.1 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | ERR4188350 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR7240492 | MDR-TB | La1.7.1 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | SRR3675568 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR1640750 | RR-TB | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2693229 | RR-TB | La3;M.canetti;lineage4.9 | None | SRR6325445 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR176766 | MDR-TB | lineage2.1;lineage4.9 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR6046295 | MDR-TB | lineage4.2;lineage4.9 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1167055 | Other | lineage4.1.2.1 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675561 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3275220 | Other | lineage3 | nl | SRR3675487 | MDR-TB | M.canetti;lineage4.9 | None | SRR3675444 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | SRR13861381 | HR-TB | lineage4.9 | None | ERR3797023 | MDR-TB | La1.8.1 | None | ERR3283016 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR266120 | Other | M.canetti | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675486 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR1873393 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR5917710 | RR-TB | lineage4.1.2.1 | None | SRR6325442 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR2446566 | Other | lineage4.9 | None | ERR2229143 | RR-TB | lineage4.9 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3468544 | RR-TB | lineage2.1;lineage4.9 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR3675508 | MDR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045952 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR5311083 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR3077978 | RR-TB | lineage1.1 | None | ERR3275196 | RR-TB | lineage2.2.1 | nl | SRR3675464 | MDR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR3675554 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4796577 | HR-TB | None | ERR278594 | MDR-TB | lineage2.1;lineage4.9 | None | SRR3675507 | RR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR3675322 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1791696 | RR-TB | La1.8.1 | None | SRR6325448 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR266126 | Other | La2;M.canetti | None |
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