Rv3457c - c.546G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
71 Sensitive
2 RR-TB
44 HR-TB
11 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
53 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 95 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.3.4 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4 | 6 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage4.1.2.1 | 5 |
| lineage2.1;lineage4.9 | 3 |
| lineage1;lineage4.9 | 1 |
| La3;lineage4.9 | 9 |
| lineage4.2.2.2 | 1 |
| 5 | |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage2.2.1 | 7 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.6.1 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.8 | 3 |
| La1;lineage4.9 | 2 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La1.7;lineage4.9 | 6 |
| lineage6 | 1 |
| lineage2.1 | 1 |
| lineage4.1.2 | 1 |
| lineage6.1.3 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage4.4.1.1.1 | 1 |
| La3;lineage4 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage3 | 2 |
| lineage1.1.2 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.2.2.1 | 1 |
| La1.7.1 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage2.2.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 181 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1180410 | Sensitive | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR5341373 | Other | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR363498 | Sensitive | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR3675265 | Other | lineage4 | None | SRR6046210 | Other | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR4178309 | Other | lineage4.1.2.1 | None | SRR29096935 | Sensitive | lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR29096897 | Sensitive | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR363437 | Sensitive | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR4800341 | Other | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR6358991 | HR-TB | None | ERR6358755 | Other | lineage4.6.1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR349299 | Other | lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR29231479 | RR-TB | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR12416824 | HR-TB | None | ERR176779 | HR-TB | lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | ERR323037 | Other | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR1023236 | Other | lineage6.1.3 | None | ERR363447 | Other | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR3797081 | Sensitive | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR10808730 | Other | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | SRR6045503 | Sensitive | lineage4.9 | None | SRR30182471 | Sensitive | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR369158 | Other | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | SRR5341293 | Sensitive | lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR13264981 | Sensitive | La1.7;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR29231425 | Sensitive | lineage4.9 | None | SRR7535086 | Other | None | SRR16149129 | MDR-TB | lineage4.2.2.1 | None | ERR4817893 | Other | lineage4.8 | None | ERR9117721 | HR-TB | None | ERR9786384 | Sensitive | lineage4.1.2.1 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816656 | Other | lineage4.9 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR473332 | Other | lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR176751 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None |
|---|
