Rv3596c - c.1425G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
68 Sensitive
2 RR-TB
32 HR-TB
4 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
32 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 87 |
| lineage4.8 | 2 |
| lineage3 | 2 |
| lineage4 | 3 |
| lineage4.8.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage2.2.1 | 4 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage2;lineage4.9 | 1 |
| La1.8.1 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.1.2.1 | 4 |
| lineage4.3.4.2 | 1 |
| La1;lineage4.9 | 3 |
| lineage2.2.1.2 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage2.2 | 1 |
| La1.2 | 1 |
| La1.6;lineage4 | 1 |
| 1 | |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| La1.7;lineage3.1;lineage4 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1.7;lineage4.9 | 2 |
| La1;lineage2;lineage4.9 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.3.4 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 139 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR067712 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR9786076 | Sensitive | lineage3 | None | ERR926163 | Other | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR1791747 | Other | La1.8.1 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR6045548 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR7496471 | Sensitive | lineage4 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR4819933 | Sensitive | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR23961542 | Other | La1;lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR23961549 | Other | La1.2 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR4796577 | HR-TB | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR28351347 | Other | lineage3 | None | SRR1180345 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR369151 | Other | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR3675246 | Other | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR29097054 | Sensitive | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR6358979 | Other | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR736848 | Other | lineage4.9 | None |
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