lineage | Count |
---|---|
78 | |
lineage4.1.2.1 | 11 |
lineage3 | 2 |
lineage2.2.1 | 6 |
lineage4.9 | 19 |
lineage4 | 3 |
lineage5.2 | 2 |
lineage1.1 | 1 |
lineage2.2 | 4 |
lineage4.6.2.2 | 2 |
lineage4.8 | 1 |
lineage3.1 | 2 |
lineage4.3.4.2.1 | 1 |
lineage4.3.4.1;La1.7 | 1 |
La1 | 1 |
La1.8.1 | 1 |
La1.2 | 1 |
lineage4.3.3 | 2 |
lineage3.1.2 | 1 |
lineage4.3.4.1 | 2 |
lineage4.1.2.1.1 | 1 |
lineage4.3.2 | 1 |
lineage6.1.3 | 1 |
lineage4.8;lineage4.1 | 1 |
lineage2.2.2 | 2 |
lineage4.4.1.1 | 2 |
lineage4.5 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.1.1.3 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage4.1.1 | 1 |
spoligotype | Count |
---|---|
None | 156 |
ID | Drug resistance | Lineage | Country iso2 | ERR2514692 | Other | None | SRR5341418 | Other | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR4821053 | Other | lineage3 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2514821 | Other | lineage2.2.1 | None | SRR6045555 | HR-TB | None | SRR6045503 | HR-TB | None | ERR2693239 | HR-TB | None | SRR6045526 | HR-TB | None | ERR278594 | HR-TB | None | ERR2446118 | Other | lineage4.1.2.1 | nl | SRR6046133 | HR-TB | None | SRR6044838 | Other | lineage4.9 | None | SRR6046225 | HR-TB | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045952 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6045399 | Other | None | SRR6046397 | Other | None | SRR6325442 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6046824 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR3077978 | Other | lineage1.1 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR294248 | HR-TB | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6896147 | Sensitive | lineage4.8 | None | ERR502889 | Other | None | ERR294266 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR323036 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323038 | HR-TB | None | ERR323063 | HR-TB | None | ERR323039 | HR-TB | None | ERR323041 | HR-TB | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323053 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR3445501 | HR-TB | None | ERR133986 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3439432 | Other | None | ERR1034652 | Other | None | ERR11465802 | Other | lineage4.3.4.1;La1.7 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797016 | HR-TB | None | ERR3468544 | HR-TB | None | ERR4798504 | Other | lineage3 | None | ERR4798262 | HR-TB | La1 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797036 | HR-TB | None | ERR3797082 | Other | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4798406 | HR-TB | None | ERR6198317 | Other | La1.2 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR6358837 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6359045 | HR-TB | None | ERR702404 | HR-TB | None | ERR736839 | Other | None | ERR8976043 | HR-TB | None | ERR6326069 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR736865 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786843 | Other | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1172310 | HR-TB | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR13837544 | Sensitive | lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR1174897 | HR-TB | None | SRR13861251 | RR-TB | lineage4.9 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861152 | Sensitive | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861362 | Other | lineage4.9 | None | SRR13861368 | RR-TB | lineage4.9 | None | SRR13861400 | Other | lineage4.9 | None | SRR13861288 | Other | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR13861611 | Sensitive | lineage4.9 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR13861510 | Other | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR13861699 | Sensitive | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | ERR158583 | HR-TB | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675486 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675488 | HR-TB | None | SRR3675482 | HR-TB | None | ERR212033 | HR-TB | None | SRR3675501 | HR-TB | None | ERR176643 | HR-TB | None | SRR3675383 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675510 | Other | None | SRR3675545 | HR-TB | None | SRR3675550 | Other | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675222 | Other | None | ERR212001 | HR-TB | None | SRR3675558 | HR-TB | None | ERR212121 | HR-TB | None | SRR3675574 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816466 | HR-TB | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR3275215 | Other | lineage4.1.2.1 | nl | ERR3275196 | Other | lineage2.2.1 | nl | ERR2229143 | Other | lineage4.1.1 | None | ERR2509673 | Other | lineage2.2.1 | None |
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