Rv1484 - c.372G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
26 Sensitive
3 RR-TB
17 HR-TB
7 MDR-TB
0 Pre-XDR-TB
1 XDR-TB
30 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;lineage4.9 | 4 |
| lineage2.2.1 | 4 |
| lineage4.3.2.1 | 1 |
| lineage4.1.2 | 2 |
| lineage4.9 | 32 |
| lineage4 | 2 |
| lineage3.1;lineage9 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La1.7 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.2.1 | 1 |
| lineage1.1.3.2 | 1 |
| lineage4.9;lineage7 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| La1.6 | 1 |
| La1.7;M.canetti;lineage4.9 | 3 |
| M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La1.7;lineage4.9 | 5 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage3 | 1 |
| lineage4.6.1.1 | 2 |
| lineage4.1.1.2 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage1.1.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 1 |
| La1.8.1 | 1 |
| lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| lineage4.6.2.2 | 2 |
| lineage4.5 | 1 |
| lineage1.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 84 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR176643 | Other | La3;lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR176751 | Other | lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR212033 | Other | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR29055611 | Sensitive | lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR4830353 | Other | La1.7 | None | SRR6046492 | Other | lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR20970016 | Other | lineage2.2.1 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR28868888 | Other | lineage1.1.3.2 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR11268038 | Other | La1.6 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR1167384 | Other | La3;lineage4.9 | None | ERR3439432 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR26399239 | Sensitive | lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR29097004 | Other | lineage3 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | SRR1169306 | Other | La3;lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR26399490 | Sensitive | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR3273109 | HR-TB | lineage4 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR29097023 | Sensitive | lineage4.9 | None | ERR13285191 | Sensitive | lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR7240033 | Other | La1.8.1 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR29097054 | Sensitive | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR4188322 | Other | lineage4.6.4;lineage4.9 | None | SRR29096203 | Sensitive | lineage4.9 | None | ERR13285192 | Sensitive | lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR29096425 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR29096107 | Sensitive | lineage4.9 | None |
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