Rv3794 - c.1828T>C


Drug resistance types
16 Sensitive 3 RR-TB 63 HR-TB 15 MDR-TB 3 Pre-XDR-TB 2 XDR-TB 102 Other
lineage Counts
lineage Count
La3;lineage2.1;lineage4.9 3
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
M.canetti;lineage2.1;lineage6.3 1
lineage4.9 46
lineage4.6.2.2 5
lineage2.1;lineage4.9;lineage6.3 10
lineage4.9;lineage6.3 5
lineage2.2.1.1 3
La1.2.BCG 1
lineage4.1.2.1 6
lineage2.2 3
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
16
lineage2.2.1 3
lineage2.1 3
lineage4.1;lineage4.8 2
lineage2.1;lineage4.9 15
M.canetti;lineage2.2 2
La3;lineage2.1;lineage6.3 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
lineage4.6.1.1 1
La3;M.canetti;lineage2.2.1 1
La3;lineage2 1
lineage4.1.1.3 2
La1.7.X-unk4;lineage4.9 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
La2;lineage4.9 1
La3;lineage2.1;lineage4.9;lineage6.3 4
M.canetti;lineage4.9 5
La1.7;M.canetti;lineage4.9 5
lineage2.1;lineage4.1.4;lineage4.9 1
lineage4.1.3 2
lineage1.2.2.2 1
lineage4 2
lineage3 1
M.canetti;lineage2.1;lineage4.9 2
lineage4.3.4.1 3
lineage4.2;lineage4.8.1;lineage4.9 2
La1.7;lineage3;lineage4.9;lineage7 1
lineage1.1.1 1
lineage4.2;lineage4.9 2
lineage4.3.2;lineage4.9 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La1.2.BCG;La1.8.1 1
M.canetti;lineage2.2.2;lineage6.2 2
lineage4.8 1
La3;lineage1.1.2 1
La1.7;lineage4.9 4
lineage2.1;lineage4.3.2;lineage4.9 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
lineage4.1.1.1 1
lineage4.3.2 1
La2;lineage4.9;lineage9 1
La3;lineage4.9 1
lineage2.1;lineage6.3 2
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
M.canetti;lineage4.2;lineage4.9 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage6.3.1 1
La1.7;lineage4.9;lineage7 2
lineage4.3.3 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
La1.7 1
lineage4.9;lineage9 1
La1.2;La1.8.1 1
lineage3.1.2.2 1
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
spoligotype Counts
spoligotype Count
None 204
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
SRR29050859 Other lineage4.9 None
ERR736834 Sensitive lineage4.9 None
ERR9786645 Other lineage4.6.2.2 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR6079962 HR-TB lineage2.2.1.1 None
ERR3283018 HR-TB lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
ERR3804155 Other lineage4.1.2.1 None
ERR4811493 HR-TB lineage4.9 None
SRR20970016 Other lineage2.2 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR3675221 Other lineage4.9 None
ERR4817060 Other None
ERR4814352 Other lineage2.2.1 None
ERR9786601 Other lineage4.1.2.1 None
ERR9786671 Other None
SRR12142341 HR-TB lineage2.1 None
ERR3801503 Sensitive lineage4.6.2.2 None
ERR9786525 Other lineage4.1;lineage4.8 None
SRR5341333 Other lineage2.1;lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR502524 HR-TB lineage4.9;lineage6.3 None
SRR3675465 Other lineage4.9;lineage6.3 None
SRR23961558 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3283036 Other lineage2.1;lineage4.9 None
SRR1173778 Other lineage4.9 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4818929 HR-TB lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR2026698 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR6358755 Other lineage4.6.1.1 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR20969677 HR-TB La3;lineage2 None
ERR502511 Sensitive lineage4.9 None
SRR3675214 Other lineage4.9 None
ERR550636 MDR-TB lineage4.1.1.3 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
ERR4817896 HR-TB lineage2.2.1 None
ERR9786682 Other lineage4.1.2.1 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR4820773 HR-TB lineage4.9 None
ERR323039 HR-TB La2;lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6045526 Other lineage4.9 None
ERR4815604 Other None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR9786526 Other lineage4.1;lineage4.8 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
SAMEA2533358 MDR-TB lineage4.1.1.3 None
ERR124636 Sensitive lineage4.9 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
SRR5341461 HR-TB lineage4.9 None
ERR4820854 Other lineage4.1.2.1 None
SRR6458423 HR-TB lineage2.2.1 None
ERR4815441 HR-TB lineage4.9 None
SRR6044942 HR-TB lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
ERR4819877 HR-TB lineage4.9 None
ERR4797201 Other lineage1.2.2.2 None
ERR4816478 HR-TB lineage4 None
ERR4800341 Other lineage3 None
ERR4816466 HR-TB lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR702406 Other lineage2.1 None
SRR5341308 Sensitive lineage4.9 None
ERR8650527 MDR-TB lineage4.3.4.1 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
SRR3675311 Other lineage4.9 None
SRR1180147 Other lineage2.2.1.1 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
SRR6046485 Other lineage4.9 None
SRR7131023 Other lineage4.1.2.1 None
SRR11662690 HR-TB lineage4.9 None
SRR14066533 Sensitive lineage1.1.1 None
ERR987722 MDR-TB None
SRR6789621 Other lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR6046295 HR-TB lineage4.2;lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR6046397 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR4818615 Sensitive None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR323062 Sensitive lineage4.9 None
ERR3283042 Other lineage4.9 None
ERR4407463 HR-TB None
ERR9786694 Other lineage4.1.2.1 None
ERR4819241 Other lineage4.9 None
ERR4828872 Sensitive lineage4.2;lineage4.9 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR18213713 HR-TB None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
ERR4817735 Other lineage4.8 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR7764328 HR-TB lineage4.3.4.1 None
ERR9117721 HR-TB La3;lineage1.1.2 None
SRR1196677 Other lineage2.2 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR3675267 Other La1.7;lineage4.9 None
SRR14782054 Other lineage4.9 None
ERR502510 Sensitive lineage4.9 None
SRR6046066 Other lineage4.9 None
ERR2027263 Other lineage4 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR176793 Other lineage4.1.1.1 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR9117805 Other lineage4.3.2 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
ERR9786711 Sensitive lineage4.6.2.2 None
ERR176643 Other La3;lineage4.9 None
ERR4816656 Other lineage4.9 None
SRR3675449 Other M.canetti;lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR3797046 HR-TB lineage4.9 None
SRR3675488 Other La1.7;lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
SRR1184294 Other lineage4.9 None
SRR1183106 RR-TB lineage2.2.1.1 None
SRR5341299 HR-TB lineage4.9 None
SRR6045233 Other M.canetti;lineage4.9 None
ERR176560 HR-TB La1.7;lineage4.9 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
ERR2514692 Other None
ERR9787197 Other None
ERR234659 Other None
ERR212034 HR-TB La1.7;lineage4.9 None
ERR4819422 HR-TB lineage4.9 None
SRR6045555 Other lineage4.9 None
ERR9786604 Other None
SRR6045380 Other lineage2.1;lineage4.9 None
SRR3675505 Other La1.7;M.canetti;lineage4.9 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR1172310 HR-TB lineage4.9 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
ERR736872 HR-TB lineage4.9 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR9787139 Other lineage6.3.1 None
ERR11591434 Sensitive lineage4.3.4.1 None
SRR1184388 Other lineage2.1;lineage4.9 None
SRR5341313 Sensitive La1.7;lineage4.9;lineage7 None
SRR1183049 RR-TB lineage2.2 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR5341432 Sensitive La1.7;lineage4.9;lineage7 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR702405 Sensitive lineage4.9 None
ERR2026697 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
SRR5341300 HR-TB lineage4.9 None
ERR4830353 Other La1.7 None
ERR1035157 Other lineage4.9 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
SRR6046133 HR-TB lineage4.9 None
SRR6789626 Other None
SRR7240033 Other La1.2;La1.8.1 None
ERR4816999 Other None
SRR6045219 HR-TB lineage4.9 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR4798648 MDR-TB lineage3.1.2.2 None
ERR294266 HR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR4872119 MDR-TB lineage4.6.2.2 None
SRR1196546 Other lineage4.9 None
SRR3675236 Other None
ERR212121 HR-TB lineage4.9;lineage6.3 None
SRR6045399 Other M.canetti;lineage4.9 None
SRR7535086 Other None
ERR4817731 HR-TB lineage4.9 None
ERR1035122 Sensitive lineage4.9 None
ERR9117709 Other None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
ERR9786611 HR-TB lineage4.1.3 None
SRR14782405 HR-TB lineage4.9 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR176751 Other lineage4.9 None