lineage | Count |
---|---|
lineage4.9 | 33 |
lineage4.8 | 1 |
lineage4.1.2.1 | 15 |
lineage4 | 39 |
51 | |
lineage2.2.1 | 8 |
lineage3 | 1 |
lineage4.2.1 | 3 |
lineage3.1 | 2 |
lineage1.1 | 1 |
lineage4.6.4 | 2 |
La1.8.1 | 2 |
lineage4.6.2.2 | 2 |
La1 | 1 |
lineage4.5 | 2 |
lineage4.3.3 | 2 |
lineage4.9.1 | 1 |
lineage4.1.2.1.1 | 1 |
lineage4.3.2 | 1 |
lineage4.4.1.1 | 3 |
lineage2 | 1 |
lineage6.1.3 | 1 |
lineage2.2.2 | 3 |
lineage1.2.1.2.1 | 1 |
lineage1.1.1.1 | 1 |
lineage4.1 | 2 |
lineage3;lineage2.1 | 1 |
lineage4.1.1 | 2 |
lineage4;lineage1.1.2 | 1 |
lineage4.3.2.1 | 1 |
spoligotype | Count |
---|---|
None | 185 |
ID | Drug resistance | Lineage | Country iso2 | SRR5341437 | Sensitive | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR5341323 | Sensitive | lineage4 | None | SRR6045503 | HR-TB | None | ERR2693239 | HR-TB | None | ERR4821085 | Other | lineage2.2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2517475 | Other | lineage4 | None | ERR4821053 | Other | lineage3 | None | SRR6046514 | HR-TB | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6045399 | Other | None | SRR6046225 | HR-TB | None | SRR6325442 | HR-TB | None | ERR278594 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6046133 | HR-TB | None | SRR6325444 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6325448 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6325447 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR4872102 | MDR-TB | lineage4.6.4 | None | ERR4831638 | Sensitive | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR294248 | HR-TB | None | ERR323041 | HR-TB | None | ERR502943 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323038 | HR-TB | None | ERR323036 | HR-TB | None | ERR5311099 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323055 | HR-TB | None | ERR323063 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR349264 | Sensitive | lineage4 | None | ERR3468544 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349265 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797083 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797082 | Other | lineage4.9 | None | ERR400326 | Sensitive | lineage4 | None | ERR400320 | Sensitive | lineage4 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR400336 | Sensitive | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR4188350 | HR-TB | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4797313 | HR-TB | None | ERR4798431 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811030 | Sensitive | None | ERR4812155 | Sensitive | None | ERR5908228 | Other | lineage4.3.3 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR6359045 | HR-TB | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR245758 | Other | lineage4.9.1 | None | ERR736835 | HR-TB | None | ERR8976043 | HR-TB | None | ERR6358837 | HR-TB | None | ERR6358991 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR9119508 | MDR-TB | lineage4.6.4 | None | ERR9285908 | Sensitive | lineage4.4.1.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR069989 | HR-TB | lineage2 | None | ERR9787153 | Other | lineage6.1.3 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | SRR069981 | HR-TB | lineage2.2.2 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR13861322 | Other | lineage4.9 | None | SRR13837677 | Sensitive | lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13861151 | RR-TB | lineage4.9 | None | SRR13861304 | Other | lineage4.9 | None | SRR13861397 | HR-TB | lineage4.9 | None | SRR1791696 | Other | La1.8.1 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR13861699 | Sensitive | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR14802150 | MDR-TB | lineage4.2.1 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR1640750 | HR-TB | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR18911980 | Sensitive | lineage2.2.2 | None | SRR19324818 | Sensitive | lineage1.1.1.1 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR1035239 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR6325445 | HR-TB | None | SRR3675482 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675266 | Sensitive | lineage4.9 | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675318 | Other | lineage4.9 | None | ERR4815550 | Other | lineage4 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675542 | Other | lineage4.9 | None | ERR176751 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4816113 | Sensitive | lineage4.1.1 | None | SRR3675553 | Sensitive | lineage4.9 | None | SRR3675558 | HR-TB | None | SRR3675577 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | None | SRR3675548 | Sensitive | lineage4.9 | None | ERR212121 | HR-TB | None | ERR4816656 | HR-TB | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR2512770 | Other | lineage4.2.1 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None |
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