lineage | Count |
---|---|
lineage3 | 3 |
lineage7;lineage2.2.1.2 | 1 |
lineage2.2 | 6 |
lineage4.9 | 23 |
lineage4.9;lineage4.6.3 | 1 |
104 | |
lineage4.3.4.2.1 | 2 |
lineage4 | 64 |
lineage4.3 | 1 |
lineage2.1 | 1 |
lineage4.1.1.2 | 1 |
lineage4.1.2.1 | 5 |
lineage4.1 | 2 |
lineage2.2.1 | 7 |
La1.8.1 | 2 |
lineage4.2.1 | 1 |
lineage4.1.2 | 2 |
La2 | 1 |
lineage4.6.2.2 | 4 |
lineage4.3.2.1 | 1 |
lineage4.4.1.2 | 1 |
La1.6 | 1 |
lineage4.3.4.1 | 1 |
La1 | 2 |
lineage4;lineage3.1 | 1 |
lineage3.1.2 | 1 |
La1.2 | 1 |
La1.8.2 | 1 |
lineage4.3.4 | 1 |
lineage4.5 | 1 |
lineage4.3.2 | 1 |
lineage1.1.2 | 1 |
lineage1.1.3.1 | 1 |
lineage4.8;lineage4.1 | 2 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
La3 | 1 |
lineage1.2.1.2 | 1 |
lineage1.1.1 | 1 |
spoligotype | Count |
---|---|
None | 252 |
ID | Drug resistance | Lineage | Country iso2 | SRR17832802 | HR-TB | lineage3 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR26399490 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR26159035 | Sensitive | lineage4.9 | None | ERR176778 | HR-TB | None | ERR176779 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675234 | Other | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR181744 | HR-TB | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3675222 | Other | None | SRR3675488 | HR-TB | None | SRR3675265 | Other | lineage4 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675501 | HR-TB | None | SRR3675502 | Other | None | ERR176568 | Other | lineage4.3 | None | ERR176643 | HR-TB | None | ERR176651 | HR-TB | None | ERR181887 | HR-TB | None | ERR176740 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675312 | HR-TB | lineage4 | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR212001 | HR-TB | None | SRR3675550 | Other | None | ERR212123 | Other | None | ERR212033 | HR-TB | None | ERR4816656 | HR-TB | None | ERR212121 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR212138 | HR-TB | lineage4 | None | ERR4816466 | HR-TB | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR2446566 | Other | lineage4.1 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4818929 | HR-TB | None | SRR5341373 | HR-TB | lineage4 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR5341418 | Other | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341313 | HR-TB | None | SRR5341330 | HR-TB | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5341400 | HR-TB | lineage4 | None | ERR1035138 | MDR-TB | None | ERR2693254 | Other | None | ERR2693231 | Other | None | SRR5341470 | HR-TB | None | ERR2693230 | Other | None | SRR5431730 | Other | La1.8.1 | None | ERR4821053 | Other | lineage3 | None | SRR6045503 | HR-TB | None | SRR6044875 | HR-TB | lineage4.9 | None | ERR2693257 | Other | None | SRR6045553 | RR-TB | lineage4.9 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045519 | HR-TB | None | SRR6045892 | Sensitive | None | ERR4829606 | Sensitive | lineage4.1.2.1 | None | SRR6045233 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046225 | HR-TB | None | SRR6044890 | Other | lineage4.9 | None | ERR2693232 | Other | lineage4.9 | None | SRR6045053 | Other | None | SRR6046046 | Other | None | SRR6045399 | Other | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046514 | HR-TB | None | SRR6046492 | Other | None | ERR4830353 | Other | None | SRR6046482 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046644 | HR-TB | None | SRR6046802 | Other | lineage4 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046897 | Sensitive | lineage4 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR294266 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502889 | Other | None | SRR6511621 | HR-TB | None | ERR4831117 | HR-TB | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323039 | HR-TB | None | ERR323045 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR323053 | HR-TB | None | ERR11268039 | Other | La1.6 | None | ERR323108 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR067681 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR108471 | HR-TB | lineage4 | None | ERR1034652 | Other | None | ERR1063857 | HR-TB | None | ERR1063859 | HR-TB | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR11465628 | Sensitive | lineage4.3.4.2.1 | None | ERR3283010 | Other | La1 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR133986 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283024 | Other | None | ERR3283040 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3445503 | HR-TB | None | ERR3439432 | Other | None | ERR4821179 | Other | lineage4.1.2.1 | gb | ERR349298 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349264 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR3797043 | HR-TB | None | ERR373946 | Sensitive | lineage4 | None | ERR3797024 | Other | lineage4.9 | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797015 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797044 | Other | None | ERR3797046 | HR-TB | None | ERR4188247 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797064 | Sensitive | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR4024991 | Other | None | ERR3797061 | Other | None | ERR3797063 | HR-TB | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797086 | Other | lineage4.9 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR403298 | HR-TB | lineage4 | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR473332 | Other | lineage4 | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4798262 | HR-TB | La1 | None | ERR4798431 | HR-TB | None | ERR4798406 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769521 | HR-TB | None | ERR4797474 | Other | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR6358991 | HR-TB | None | ERR6140806 | Other | La1.8.2 | None | ERR4811493 | HR-TB | None | ERR6865502 | Sensitive | lineage4 | None | ERR6866807 | HR-TB | lineage4 | None | ERR6866410 | Sensitive | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866022 | Other | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736835 | HR-TB | None | ERR736848 | HR-TB | None | ERR736839 | Other | None | ERR736856 | HR-TB | lineage4 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR736875 | HR-TB | lineage4 | None | ERR752229 | Other | lineage4.5 | None | ERR736865 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | SRR21733183 | RR-TB | lineage1.1.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9119669 | HR-TB | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786843 | Other | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR987722 | HR-TB | None | SRR10808805 | Sensitive | None | SRR10808399 | Sensitive | lineage4 | None | ERR990545 | Other | lineage3 | None | SRR1169249 | Other | La3 | None | SRR11462932 | Other | La1.8.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1167384 | Other | lineage4 | None | SRR1169306 | Other | None | SRR1172310 | HR-TB | None | SRR1183049 | Other | lineage2.2 | None | SRR1174897 | HR-TB | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR14801749 | Sensitive | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR14066533 | Sensitive | lineage1.1.1 | None |
---|