Rv0668 - c.3159T>G
Drug resistance types
35 Sensitive
13 RR-TB
67 HR-TB
28 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
72 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage2.1 | 1 |
| M.canetti;lineage4.9 | 5 |
| M.canetti;lineage2.1;lineage4.9 | 19 |
| lineage4.9 | 78 |
| lineage4.3.4.2.1 | 3 |
| lineage2.2 | 4 |
| lineage3 | 4 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.9 | 3 |
| lineage4.9;lineage7 | 5 |
| lineage4.4.1.1 | 2 |
| lineage4.1.1.3;lineage4.9 | 2 |
| La3;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.5 | 2 |
| M.canetti;lineage2.1;lineage4 | 1 |
| La2;lineage2.2 | 1 |
| lineage2.1;lineage4.9 | 4 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 3 |
| La1.7;lineage3.1;lineage4 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4 | 3 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| lineage4.1.2.1 | 9 |
| La1.8.1 | 2 |
| lineage4.4.2 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.3.4.1 | 3 |
| 2 | |
| lineage1.1 | 1 |
| lineage2.2.1 | 10 |
| La1;lineage4.9 | 1 |
| lineage4.6.2.2 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.3.4 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage4.8 | 2 |
| M.canetti;lineage2.2 | 1 |
| lineage4.1.1.3 | 1 |
| lineage1;lineage4.9 | 2 |
| La3;lineage4.3.4 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage6.1.3 | 1 |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| La1.7.1 | 1 |
| lineage4.7 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La1.7;lineage4.9;lineage7 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La2;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage2.2.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 220 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR323041 | HR-TB | M.canetti;lineage2.1 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR28044873 | Pre-XDR-TB | lineage3 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR29231479 | RR-TB | lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR3675243 | Other | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3468607 | Other | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR3675284 | Sensitive | lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR2693228 | RR-TB | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR3468544 | Other | lineage2.1;lineage4.9 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR7496471 | Sensitive | lineage4 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR1791696 | Other | La1.8.1 | None | SRR3675280 | RR-TB | lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR3675561 | Other | M.canetti;lineage2.1;lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | DRR188519 | Other | lineage4.4.2 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR6045290 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR3675387 | Other | lineage4.9 | None | ERR4188350 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR3675441 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR473332 | Other | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | ERR4769452 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR12708416 | Sensitive | None | ERR3077978 | RR-TB | lineage1.1 | None | ERR1873393 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6325442 | HR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR1162864 | Other | lineage4.1.2.1 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR9786076 | Sensitive | lineage3 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR1640750 | Other | None | ERR176651 | Other | lineage4.9 | None | ERR176658 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1165506 | Other | lineage4.1.2.1 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR387051 | Other | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR5311083 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR4799025 | Other | lineage4.8 | None | SRR6046492 | Other | lineage4.9 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | ERR161037 | Other | lineage4.9 | None | SRR3675582 | Other | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR11465151 | Sensitive | lineage4.3.4.1 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR11465015 | Sensitive | lineage4.3.4.2.1 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | ERR8976043 | HR-TB | lineage2.1;lineage2.2;lineage6.3 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR1165584 | Other | lineage4.1.2.1 | None | ERR2517528 | RR-TB | lineage3 | nl | ERR473314 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR7240492 | HR-TB | La1.7.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR4819241 | Other | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR752229 | Other | lineage4.5 | None | SRR3675270 | Other | lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR8665994 | Other | lineage4.9 | None | ERR3797083 | RR-TB | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR11465351 | Sensitive | lineage4.1.2.1 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR181887 | Other | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR9119138 | RR-TB | M.canetti;lineage4.3.1;lineage4.9 | None | ERR3283016 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR6046245 | Other | lineage4.9 | None | ERR3797043 | Sensitive | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR1165423 | RR-TB | lineage4.1.2.1 | None | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None |
|---|
