Rv0701 - c.339T>C


Drug resistance types
10 Sensitive 10 RR-TB 93 HR-TB 46 MDR-TB 2 Pre-XDR-TB 0 XDR-TB 74 Other
lineage Counts
lineage Count
lineage4.3.3 1
La3;M.canetti;lineage2.1;lineage3.1 1
lineage4.9 31
lineage4.1.2.1 8
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
La3;lineage2.1;lineage4.9;lineage6.3 2
lineage2.2 4
lineage4.6.3;lineage4.9 1
M.canetti;lineage2.1;lineage4.9 24
La3;M.canetti;lineage2.1;lineage4.9 12
M.canetti;lineage4.9 2
lineage4.9;lineage7 2
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
lineage4 2
lineage2.1;lineage4.9 11
La1.7;M.canetti;lineage4.9 2
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
lineage2.2.1 6
M.canetti;lineage2.1;lineage4.9;lineage6.3 6
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
lineage2.1;lineage4.9;lineage6.3 7
La1.7.1;lineage4.9 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 5
lineage5.2 2
La3 1
La3;lineage4.9 3
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
lineage4.1.3 2
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
lineage2.2.1.2 1
M.canetti;lineage2.1;lineage6.3 2
La1.7;lineage3;lineage4.9;lineage7 1
lineage2.1;lineage2.2;lineage6.3 1
La1.7;lineage4.9;lineage7 3
M.canetti;lineage4.2 1
lineage2.2.1.1 1
La3;M.canetti;lineage3.1 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La1.7;lineage4.9 3
10
lineage4.1 2
lineage2.1;lineage4.1.1.1;lineage6.3 2
lineage2.1 2
lineage4.6.2.2 3
lineage2.1;lineage4.9;lineage7 1
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
M.canetti;lineage4.2;lineage4.9 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage4.3.4 1
La3;M.canetti;lineage2.2.1 1
M.canetti;lineage2.2.2;lineage6.2 2
lineage2.1;lineage4.3.2 1
lineage2.1;lineage6.3 1
La3;M.canetti;lineage4.9 2
lineage1;lineage4.9 1
lineage4.1.1.3 1
lineage4.1.1.1 2
lineage2.1;lineage4.9;lineage6.3;lineage8 1
La3;lineage4.8 1
lineage4.8.1 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
lineage1.1 1
M.canetti;lineage2.1 1
lineage2.2.1.2;lineage7 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
La3;lineage2.1;lineage4.9 1
lineage6.3.1 1
M.canetti;lineage2.1;lineage4 1
La1.6;La3;M.canetti;lineage4.2.2 1
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 1
lineage2.1;lineage4.1.4;lineage4.9 1
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage4.9;lineage6.3 2
M.canetti;lineage2.1;lineage4.1.2.1 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La1.2.BCG 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
La3;M.canetti;lineage4.8;lineage4.9 1
lineage4.2;lineage4.9 1
lineage1.1.3 1
La3;lineage2.1;lineage6.3 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 1
spoligotype Counts
spoligotype Count
None 235
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR1184298 Pre-XDR-TB lineage4.3.3 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR9119669 HR-TB lineage4.9 None
SRR5535933 Other lineage4.9 None
ERR9786682 Other lineage4.1.2.1 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR5341400 Sensitive lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR20969708 HR-TB lineage2.2 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323036 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1196677 Other lineage2.2 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6045526 Other lineage4.9 None
ERR2027263 Other lineage4 None
SRR5341330 Other lineage4.9 None
ERR3468544 Other lineage2.1;lineage4.9 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
ERR4820854 Other lineage4.1.2.1 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
SRR3675561 Other M.canetti;lineage2.1;lineage4.9 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4872094 MDR-TB lineage5.2 None
SRR1172728 RR-TB La3 None
ERR3797064 Other La3;lineage4.9 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
SRR3675450 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR1172796 Sensitive lineage2.2.1.2 None
ERR176751 Other lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR5311096 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
ERR8976043 HR-TB lineage2.1;lineage2.2;lineage6.3 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
SRR1183106 RR-TB lineage2.2.1.1 None
ERR1873393 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR11662690 HR-TB lineage4.9 None
SRR5341456 Other lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR9119500 MDR-TB lineage5.2 None
ERR9786843 Other None
ERR137224 Sensitive lineage4.1 ru
ERR9787197 Other None
SRR6325442 HR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR234659 Other None
ERR473314 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR9786601 Other lineage4.1.2.1 None
ERR9786671 Other None
SRR12142341 HR-TB lineage2.1 None
ERR3801503 Sensitive lineage4.6.2.2 None
SRR3675539 HR-TB lineage4.9;lineage7 None
SRR3675555 HR-TB lineage2.1;lineage4.9;lineage7 None
SRR3675558 HR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR1640750 Other None
SRR3675568 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR1063858 HR-TB lineage4.9 None
ERR3283042 Other lineage4.9 None
ERR9786694 Other lineage4.1.2.1 None
SRR1180137 Other lineage2.2.1 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
SRR28351584 HR-TB lineage2.2.1 None
SRR5341373 Other lineage4.9 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR736817 HR-TB lineage4.3.4 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR772255 MDR-TB lineage2.1;lineage4.3.2 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR5162090 RR-TB lineage4.9 None
SRR5341432 Sensitive La1.7;lineage4.9;lineage7 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
SRR6045053 Other lineage4 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
ERR4816551 HR-TB lineage4.1.1.3 None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR6046133 HR-TB lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4816999 Other None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3283011 Other La3;lineage4.9 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR2041726 MDR-TB lineage4.1.2.1 None
ERR176793 Other lineage4.1.1.1 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR3675464 HR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR9786711 Sensitive lineage4.6.2.2 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR12416842 HR-TB lineage4.9 None
ERR702406 Other lineage2.1 None
ERR176766 HR-TB lineage2.1;lineage4.9 None
SRR1180172 Other lineage2.2.1 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR7496509 Other None
ERR12015083 Other La3;lineage4.8 None
SRR12708389 MDR-TB lineage4.8.1 None
ERR1034634 HR-TB lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
SRR5341418 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR3283018 HR-TB lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3077978 RR-TB lineage1.1 None
ERR323041 HR-TB M.canetti;lineage2.1 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4814352 Other lineage2.2.1 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR9786604 Other None
SRR5341333 Other lineage2.1;lineage4.9 None
SRR3675444 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6045217 Sensitive lineage4.9 None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR23961558 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3283036 Other lineage2.1;lineage4.9 None
SRR6045952 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR7645876 HR-TB lineage4.1 None
ERR176651 Other lineage4.9 None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283024 Other La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
ERR387051 Other lineage4.9 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
ERR9787139 Other lineage6.3.1 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311079 Other La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR1163221 MDR-TB lineage4.1.2.1 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR5311103 RR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR14801759 HR-TB La1.7;lineage4.9 None
SRR3675486 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR181887 Other lineage4.9 None
ERR2446566 Other lineage4.9 None
SRR6045219 HR-TB lineage4.9 None
SRR6789626 Other None
ERR9786617 Other lineage4.1.1.1 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
SRR1196546 Other lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR1035162 Other M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR278594 HR-TB lineage2.1;lineage4.9 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
SRR3675515 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311089 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4816466 HR-TB lineage4.9 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
ERR1035122 Sensitive lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR176643 Other La3;lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR3675494 RR-TB lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR9786645 Other lineage4.6.2.2 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR7496472 Other lineage4.9 None
SRR1184294 Other lineage4.9 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
ERR3804155 Other lineage4.1.2.1 None
SRR20970016 Other lineage2.2 None
ERR9786642 Other lineage4.1.2.1 None
SRR1184381 MDR-TB None
ERR502889 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
ERR4819781 Other lineage2.2.1 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR3675545 Other La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6046878 Other lineage4.9 None
ERR133986 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR4828872 Sensitive lineage4.2;lineage4.9 None
SRR3675322 HR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR4553481 MDR-TB lineage1.1.3 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR5311083 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR5341313 Sensitive La1.7;lineage4.9;lineage7 None
SRR1183049 RR-TB lineage2.2 None