Rv0407 - c.558C>A


Drug resistance types
3 Sensitive 0 RR-TB 20 HR-TB 7 MDR-TB 8 Pre-XDR-TB 0 XDR-TB 19 Other
lineage Counts
lineage Count
lineage4.5 8
lineage4.9 9
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
La2;lineage4.9;lineage9 1
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
lineage4.6.2.2 2
lineage4.9;lineage7 2
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
M.canetti;lineage4.9;lineage9 1
M.canetti;lineage4.9 2
lineage2.1;lineage4.3.2;lineage4.9 1
lineage4.1.2.1 2
2
La1.7;lineage4.9 2
lineage2.1;lineage4.9;lineage7 1
lineage2.2.1 1
La2;lineage4.9 2
La1.6;La3;lineage4.6.4;lineage4.9 1
La1.6;La3;lineage4.9 2
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
lineage4.9;lineage6.3 1
La1.2.BCG 1
lineage4.3.2;lineage4.9 1
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 1
lineage3.1.2.1;lineage3.1.2.2 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
La2;lineage2.2 1
lineage2.1;lineage4.9 1
spoligotype Counts
spoligotype Count
None 57
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR10305618 Pre-XDR-TB lineage4.5 None
SRR6045526 Other lineage4.9 None
SRR14782054 Other lineage4.9 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
ERR4816466 HR-TB lineage4.9 None
ERR2179639 Pre-XDR-TB lineage4.5 cn
SRR3675234 Other La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR3283018 HR-TB lineage4.9 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR3801503 Sensitive lineage4.6.2.2 None
SRR3675539 HR-TB lineage4.9;lineage7 None
ERR3283024 Other La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
SRR1723927 Pre-XDR-TB lineage4.5 cn
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
SRR6824528 Pre-XDR-TB lineage4.5 cn
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR10305616 Pre-XDR-TB lineage4.5 None
ERR9786711 Sensitive lineage4.6.2.2 None
SRR14782405 HR-TB lineage4.9 None
SRR1183111 HR-TB lineage4.9 None
ERR2041725 MDR-TB lineage4.1.2.1 None
SRR6045233 Other M.canetti;lineage4.9 None
ERR2514692 Other None
SRR10808730 Other lineage4.9 None
ERR212034 HR-TB La1.7;lineage4.9 None
SRR3675555 HR-TB lineage2.1;lineage4.9;lineage7 None
SRR6046382 Sensitive lineage2.2.1 None
SRR1723928 Pre-XDR-TB lineage4.5 cn
ERR323039 HR-TB La2;lineage4.9 None
ERR2693231 Other La1.6;La3;lineage4.6.4;lineage4.9 None
ERR3797061 Other La1.6;La3;lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR2693254 Other La1.6;La3;lineage4.9 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR2041726 MDR-TB lineage4.1.2.1 None
SRR6046225 Other lineage4.9;lineage6.3 None
ERR4798262 HR-TB La1.2.BCG None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR987722 MDR-TB None
SRR1180226 HR-TB lineage4.9 None
SRR6824462 Pre-XDR-TB lineage4.5 cn
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
ERR2179638 Pre-XDR-TB lineage4.5 cn
ERR2693257 Other La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 None
ERR987729 HR-TB lineage3.1.2.1;lineage3.1.2.2 None
ERR387051 Other lineage4.9 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR3675495 Other lineage2.1;lineage4.9 None
SRR3675231 MDR-TB lineage4.9;lineage7 None