Rv1173 - c.2133G>C
Drug resistance types
5 Sensitive
2 RR-TB
28 HR-TB
7 MDR-TB
1 Pre-XDR-TB
3 XDR-TB
68 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 25 |
| lineage4.3.4.2 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4 | 1 |
| 17 | |
| lineage4.6.1 | 1 |
| lineage3 | 2 |
| lineage6.3.1 | 1 |
| lineage4.9;lineage6.3 | 8 |
| M.canetti;lineage4.9 | 2 |
| La1.7.1;lineage4.9 | 1 |
| lineage2.1 | 2 |
| lineage2.2.1 | 7 |
| lineage4.3.2.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| M.canetti;lineage2.2 | 2 |
| lineage2.1;lineage4.9 | 8 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.6.2.2 | 2 |
| M.canetti;lineage1 | 1 |
| lineage5.2 | 2 |
| lineage4.8 | 1 |
| lineage4.1.2.1 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| La3;lineage4.9 | 2 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.1.2 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage3.1;lineage9 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 114 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR15368973 | Other | lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4797201 | Other | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4811142 | RR-TB | None | ERR4797588 | MDR-TB | lineage3 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR12416824 | HR-TB | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR29096387 | Sensitive | M.canetti;lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR28119777 | Other | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR702406 | Other | lineage2.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR7496472 | Other | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR234659 | Other | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR6045555 | Other | lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR4811105 | HR-TB | None | ERR502912 | Other | lineage2.2.1 | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR4811075 | Other | None | SRR28119753 | Other | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR3675248 | Other | lineage4.9 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9896144 | Other | lineage3 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | SRR28119811 | Other | lineage2.2.1 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR6046485 | Other | lineage4.9 | None | SRR1184381 | MDR-TB | None | ERR212001 | HR-TB | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR9786671 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR3675457 | Other | lineage4.9 | None | ERR4407463 | HR-TB | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4800341 | Other | None | ERR4810741 | HR-TB | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR4811311 | Other | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR9117721 | HR-TB | None | ERR9117709 | Other | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR29016780 | Other | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR2514692 | Other | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1173778 | Other | lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR4798099 | Other | lineage4.9 | None |
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