Rv0667 - c.1659G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
8 Sensitive
3 RR-TB
32 HR-TB
5 MDR-TB
1 Pre-XDR-TB
2 XDR-TB
38 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| 14 | |
| lineage4.9 | 25 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 2 |
| lineage4.6.2.2 | 2 |
| La1.7;M.canetti;lineage4.9 | 3 |
| lineage5.2 | 2 |
| lineage3.1 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 3 |
| lineage4.1.2.1 | 5 |
| lineage4.2;lineage4.9 | 2 |
| M.canetti;lineage2.2 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage2.2.1.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.8 | 1 |
| lineage2.2.1.1 | 1 |
| La3;lineage4.9 | 2 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.1 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4 | 2 |
| lineage4.9;lineage6.3 | 1 |
| lineage2.2.1 | 2 |
| lineage2.1 | 1 |
| lineage1.1.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 89 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR9786604 | Other | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4816656 | Other | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | SRR28119805 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3283042 | Other | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR4811105 | HR-TB | None | ERR4811311 | Other | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR9786384 | Sensitive | lineage4.1.2.1 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR1184294 | Other | lineage4.9 | None | SRR1184381 | MDR-TB | None | ERR234659 | Other | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045526 | Other | lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR4797201 | Other | None | ERR4800341 | Other | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR6358991 | HR-TB | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR4811142 | RR-TB | None | ERR4811075 | Other | None | ERR9786526 | Other | lineage4.1 | None | ERR3797043 | Sensitive | lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR9786525 | Other | lineage4 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR28119811 | Other | lineage2.2.1 | None | ERR176751 | Other | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | SRR25827682 | Other | None | ERR212001 | HR-TB | None |
|---|
