Rv0682 - c.374G>A
Drug resistance types
61 Sensitive
5 RR-TB
28 HR-TB
11 MDR-TB
0 Pre-XDR-TB
1 XDR-TB
49 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage4.9 | 2 |
| lineage5.1.4 | 1 |
| lineage4.9 | 60 |
| lineage1.1.1 | 1 |
| 3 | |
| lineage4.2;lineage4.9 | 3 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La3;lineage4.9 | 10 |
| lineage4.2.1 | 1 |
| lineage2.2.1 | 8 |
| lineage4.1;lineage4.9 | 2 |
| lineage6.1.1 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La1.2.BCG | 2 |
| lineage4.6.3;lineage4.9 | 2 |
| La2;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4 | 2 |
| lineage4.9;lineage9 | 2 |
| lineage4.6.2.2 | 2 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage2.2.1.1 | 3 |
| lineage4.3.2;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage1;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.5 | 3 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4.8 | 1 |
| lineage3.1.2.2 | 1 |
| lineage3 | 2 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 2 |
| La1.8.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage1.1.1;lineage4 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.6;lineage4 | 1 |
| lineage3.1;lineage9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| La3;lineage4 | 1 |
| lineage4.3.4.2.1 | 1 |
| La1.2.BCG;lineage4.9 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage1.1.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage6.1.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 155 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045233 | Other | M.canetti;lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR3797081 | Sensitive | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | ERR987722 | MDR-TB | None | ERR3797079 | Sensitive | lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR29096410 | Other | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675522 | Other | lineage4.9 | None | SRR1915479 | Other | La1.2.BCG | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | SRR5341293 | Sensitive | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR11662694 | Other | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR3797043 | Sensitive | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR3675318 | Other | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR3675387 | Other | lineage4.9 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR3797065 | RR-TB | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | SRR6044835 | Other | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR12708416 | Sensitive | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | ERR3797029 | Other | lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR736848 | Other | lineage4.9 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR4816548 | HR-TB | lineage4.5 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR4798504 | RR-TB | lineage3 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR3797085 | Other | lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR2514552 | Sensitive | lineage3 | None | SRR29096150 | Other | lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR926163 | Other | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR3797073 | Other | La1.8.1 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR3675247 | Other | lineage4.9 | None | ERR176751 | Other | lineage4.9 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR29097066 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR1915487 | Other | La1.2.BCG | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR3283042 | Other | lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR987729 | HR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | ERR3283028 | Other | La3;lineage4 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | SRR8692887 | Other | None | ERR363449 | Sensitive | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR1915481 | Other | La1.2.BCG;lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR4798139 | RR-TB | lineage1.1.2 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR9787153 | Other | lineage6.1.3 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None |
|---|
